Literature DB >> 16921347

Evolution of primate gene expression.

Philipp Khaitovich1, Wolfgang Enard, Michael Lachmann, Svante Pääbo.   

Abstract

It has been suggested that evolutionary changes in gene expression account for most phenotypic differences between species, in particular between humans and apes. What general rules can be described governing expression evolution? We find that a neutral model where negative selection and divergence time are the major factors is a useful null hypothesis for both transcriptome and genome evolution. Two tissues that stand out with regard to gene expression are the testes, where positive selection has exerted a substantial influence in both humans and chimpanzees, and the brain, where gene expression has changed less than in other organs but acceleration might have occurred in human ancestors.

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Year:  2006        PMID: 16921347     DOI: 10.1038/nrg1940

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  133 in total

1.  The evolution of gene expression levels in mammalian organs.

Authors:  David Brawand; Magali Soumillon; Anamaria Necsulea; Philippe Julien; Gábor Csárdi; Patrick Harrigan; Manuela Weier; Angélica Liechti; Ayinuer Aximu-Petri; Martin Kircher; Frank W Albert; Ulrich Zeller; Philipp Khaitovich; Frank Grützner; Sven Bergmann; Rasmus Nielsen; Svante Pääbo; Henrik Kaessmann
Journal:  Nature       Date:  2011-10-19       Impact factor: 49.962

2.  Diversification in the genetic architecture of gene expression and transcriptional networks in organ differentiation of Populus.

Authors:  Derek R Drost; Catherine I Benedict; Arthur Berg; Evandro Novaes; Carolina R D B Novaes; Qibin Yu; Christopher Dervinis; Jessica M Maia; John Yap; Brianna Miles; Matias Kirst
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

3.  Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways.

Authors:  Jeremy A Miller; Steve Horvath; Daniel H Geschwind
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-25       Impact factor: 11.205

Review 4.  Human brain evolution: from gene discovery to phenotype discovery.

Authors:  Todd M Preuss
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-20       Impact factor: 11.205

5.  Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques.

Authors:  Xiling Liu; Mehmet Somel; Lin Tang; Zheng Yan; Xi Jiang; Song Guo; Yuan Yuan; Liu He; Anna Oleksiak; Yan Zhang; Na Li; Yuhui Hu; Wei Chen; Zilong Qiu; Svante Pääbo; Philipp Khaitovich
Journal:  Genome Res       Date:  2012-02-02       Impact factor: 9.043

6.  Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques.

Authors:  Guangmei Yan; Guojie Zhang; Xiaodong Fang; Yanfeng Zhang; Cai Li; Fei Ling; David N Cooper; Qiye Li; Yan Li; Alain J van Gool; Hongli Du; Jiesi Chen; Ronghua Chen; Pei Zhang; Zhiyong Huang; John R Thompson; Yuhuan Meng; Yinqi Bai; Jufang Wang; Min Zhuo; Tao Wang; Ying Huang; Liqiong Wei; Jianwen Li; Zhiwen Wang; Haofu Hu; Pengcheng Yang; Liang Le; Peter D Stenson; Bo Li; Xiaoming Liu; Edward V Ball; Na An; Quanfei Huang; Yong Zhang; Wei Fan; Xiuqing Zhang; Yingrui Li; Wen Wang; Michael G Katze; Bing Su; Rasmus Nielsen; Huanming Yang; Jun Wang; Xiaoning Wang; Jian Wang
Journal:  Nat Biotechnol       Date:  2011-10-16       Impact factor: 54.908

7.  Conservation and evolution of gene coexpression networks in human and chimpanzee brains.

Authors:  Michael C Oldham; Steve Horvath; Daniel H Geschwind
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-13       Impact factor: 11.205

8.  Mapping gene expression in two Xenopus species: evolutionary constraints and developmental flexibility.

Authors:  Itai Yanai; Leonid Peshkin; Paul Jorgensen; Marc W Kirschner
Journal:  Dev Cell       Date:  2011-04-19       Impact factor: 12.270

9.  Constraint and turnover in sex-biased gene expression in the genus Drosophila.

Authors:  Yu Zhang; David Sturgill; Michael Parisi; Sudhir Kumar; Brian Oliver
Journal:  Nature       Date:  2007-11-08       Impact factor: 49.962

10.  Null mutations in human and mouse orthologs frequently result in different phenotypes.

Authors:  Ben-Yang Liao; Jianzhi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-05       Impact factor: 11.205

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