Literature DB >> 16919967

Collaborative EM image processing with the IPLT image processing library and toolbox.

Ansgar Philippsen1, Andreas D Schenk, Gian A Signorell, Valerio Mariani, Simon Berneche, Andreas Engel.   

Abstract

We present the Image Processing Library and Toolbox, IPLT, in the context of a collaborative electron microscopy processing effort, which has driven the evolution of our software architecture over the last years. The high-level interface design as well as the underlying implementations are described to demonstrate the flexibility of the IPLT framework. It aims to support the wide range of skills and interests of methodologically oriented scientists who wish to implement their ideas and algorithms as processing code.

Mesh:

Year:  2006        PMID: 16919967     DOI: 10.1016/j.jsb.2006.06.009

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  18 in total

1.  Electron crystallography of membrane proteins.

Authors:  Ben Hankamer; Robert Glaeser; Henning Stahlberg
Journal:  J Struct Biol       Date:  2007-12       Impact factor: 2.867

Review 2.  3D electron microscopy of biological nanomachines: principles and applications.

Authors:  C O S Sorzano; S Jonic; M Cottevieille; E Larquet; N Boisset; S Marco
Journal:  Eur Biophys J       Date:  2007-07-05       Impact factor: 1.733

Review 3.  Revival of electron crystallography.

Authors:  Richard K Hite; Stefan Raunser; Thomas Walz
Journal:  Curr Opin Struct Biol       Date:  2007-08-27       Impact factor: 6.809

Review 4.  Present and future of membrane protein structure determination by electron crystallography.

Authors:  Iban Ubarretxena-Belandia; David L Stokes
Journal:  Adv Protein Chem Struct Biol       Date:  2010       Impact factor: 3.507

Review 5.  Electron crystallography--the waking beauty of structural biology.

Authors:  Christopher R Pope; Vinzenz M Unger
Journal:  Curr Opin Struct Biol       Date:  2012-04-21       Impact factor: 6.809

6.  Projection structure of a member of the amino acid/polyamine/organocation transporter superfamily.

Authors:  Fabio Casagrande; Merce Ratera; Andreas D Schenk; Mohamed Chami; Eva Valencia; Jesus Maria Lopez; David Torrents; Andreas Engel; Manuel Palacin; Dimitrios Fotiadis
Journal:  J Biol Chem       Date:  2008-09-25       Impact factor: 5.157

7.  Anabolic and catabolic responses of human articular chondrocytes to varying oxygen percentages.

Authors:  Simon Ströbel; Marko Loparic; David Wendt; Andreas D Schenk; Christian Candrian; Raija L P Lindberg; Florina Moldovan; Andrea Barbero; Ivan Martin
Journal:  Arthritis Res Ther       Date:  2010-03-02       Impact factor: 5.156

8.  OpenStructure: a flexible software framework for computational structural biology.

Authors:  Marco Biasini; Valerio Mariani; Jürgen Haas; Stefan Scheuber; Andreas D Schenk; Torsten Schwede; Ansgar Philippsen
Journal:  Bioinformatics       Date:  2010-08-23       Impact factor: 6.937

9.  A pipeline for comprehensive and automated processing of electron diffraction data in IPLT.

Authors:  Andreas D Schenk; Ansgar Philippsen; Andreas Engel; Thomas Walz
Journal:  J Struct Biol       Date:  2013-03-14       Impact factor: 2.867

Review 10.  Molecular electron microscopy: state of the art and current challenges.

Authors:  Henning Stahlberg; Thomas Walz
Journal:  ACS Chem Biol       Date:  2008-05-16       Impact factor: 5.100

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