Literature DB >> 16916633

When to believe what you see.

Jennifer A Nelson1, Olke C Uhlenbeck.   

Abstract

The recent X-ray crystal structure of a hammerhead ribozyme derived from Schistosoma mansoni containing the rate-enhancing peripheral domain has a catalytic core that is very different from the catalytic core present in the structure of the "minimal" hammerhead, which lacks a peripheral domain (Martick and Scott, 2006). The new structure reconciles many of the disagreements between the minimal hammerhead structure and the biochemical data on the cleavage properties of chemically modified hammerheads. The new structure also emphasizes the dynamic nature of small RNA domains and provides a cautionary tale for everyone who tries to use structure to understand function.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16916633     DOI: 10.1016/j.molcel.2006.08.001

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  31 in total

1.  Folding of the hammerhead ribozyme: pyrrolo-cytosine fluorescence separates core folding from global folding and reveals a pH-dependent conformational change.

Authors:  Iwona A Buskiewicz; John M Burke
Journal:  RNA       Date:  2012-01-24       Impact factor: 4.942

2.  Metal-ion rescue revisited: biochemical detection of site-bound metal ions important for RNA folding.

Authors:  John K Frederiksen; Nan-Sheng Li; Rhiju Das; Daniel Herschlag; Joseph A Piccirilli
Journal:  RNA       Date:  2012-04-26       Impact factor: 4.942

3.  Coupling of fast and slow modes in the reaction pathway of the minimal hammerhead ribozyme cleavage.

Authors:  Ravi Radhakrishnan
Journal:  Biophys J       Date:  2007-06-01       Impact factor: 4.033

Review 4.  Hammerhead redux: does the new structure fit the old biochemical data?

Authors:  Jennifer A Nelson; Olke C Uhlenbeck
Journal:  RNA       Date:  2008-02-20       Impact factor: 4.942

5.  A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization.

Authors:  Andrew T Torelli; Jolanta Krucinska; Joseph E Wedekind
Journal:  RNA       Date:  2007-05-08       Impact factor: 4.942

6.  Determination of hepatitis delta virus ribozyme N(-1) nucleobase and functional group specificity using internal competition kinetics.

Authors:  Daniel L Kellerman; Kandice S Simmons; Mayra Pedraza; Joseph A Piccirilli; Darrin M York; Michael E Harris
Journal:  Anal Biochem       Date:  2015-05-01       Impact factor: 3.365

Review 7.  Model systems: how chemical biologists study RNA.

Authors:  Andro C Rios; Yitzhak Tor
Journal:  Curr Opin Chem Biol       Date:  2009-10-29       Impact factor: 8.822

8.  Effect of high hydrostatic pressure on hydration and activity of ribozymes.

Authors:  Małgorzata Giel-Pietraszuk; Agnieszka Fedoruk-Wyszomirska; Jan Barciszewski
Journal:  Mol Biol Rep       Date:  2010-03-04       Impact factor: 2.316

9.  Inner-Sphere Coordination of Divalent Metal Ion with Nucleobase in Catalytic RNA.

Authors:  Xin Liu; Yu Chen; Carol A Fierke
Journal:  J Am Chem Soc       Date:  2017-11-22       Impact factor: 15.419

10.  Phylogenetic footprinting of non-coding RNA: hammerhead ribozyme sequences in a satellite DNA family of Dolichopoda cave crickets (Orthoptera, Rhaphidophoridae).

Authors:  Lene Martinsen; Arild Johnsen; Federica Venanzetti; Lutz Bachmann
Journal:  BMC Evol Biol       Date:  2010-01-04       Impact factor: 3.260

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.