Literature DB >> 16913692

Magnitude and directionality of the interaction energy of the aliphatic CH/pi interaction: significant difference from hydrogen bond.

Seiji Tsuzuki1, Kazumasa Honda, Tadafumi Uchimaru, Masuhiro Mikami, Asuka Fujii.   

Abstract

The CCSD(T) level interaction energies of CH/pi complexes at the basis set limit were estimated. The estimated interaction energies of the benzene complexes with CH(4), CH(3)CH(3), CH(2)CH(2), CHCH, CH(3)NH(2), CH(3)OH, CH(3)OCH(3), CH(3)F, CH(3)Cl, CH(3)ClNH(2), CH(3)ClOH, CH(2)Cl(2), CH(2)FCl, CH(2)F(2), CHCl(3), and CH(3)F(3) are -1.45, -1.82, -2.06, -2.83, -1.94, -1.98, -2.06, -2.31, -2.99, -3.57, -3.71, -4.54, -3.88, -3.22, -5.64, and -4.18 kcal/mol, respectively. Dispersion is the major source of attraction, even if substituents are attached to the carbon atom of the C-H bond. The dispersion interaction between benzene and chlorine atoms, which is not the CH/pi interaction, is the cause of the very large interaction energy of the CHCl(3) complex. Activated CH/pi interaction (acetylene and substituted methanes with two or three electron-withdrawing groups) is not very weak. The nature of the activated CH/pi interaction may be similar to the hydrogen bond. On the other hand, the nature of other typical (nonactivated) CH/pi interactions is completely different from that of the hydrogen bond. The typical CH/pi interaction is significantly weaker than the hydrogen bond. Dispersion interaction is mainly responsible for the attraction in the CH/pi interaction, whereas electrostatic interaction is the major source of attraction in the hydrogen bond. The orientation dependence of the interaction energy of the typical CH/pi interaction energy is very small, whereas the hydrogen bond has strong directionality. The weak directionality suggests that the hydrogen atom of the interacting C-H bond is not essential for the attraction and that the typical CH/pi interaction does not play critical roles in determining the molecular orientation in molecular assemblies.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16913692     DOI: 10.1021/jp064206j

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  9 in total

1.  Direct detection of CH/pi interactions in proteins.

Authors:  Michael J Plevin; David L Bryce; Jérôme Boisbouvier
Journal:  Nat Chem       Date:  2010-05-02       Impact factor: 24.427

2.  Roles of electrostatic interaction and dispersion in CH···CH, CH···π, and π···π ethylene dimers.

Authors:  Ye Cao; Ming Wah Wong
Journal:  J Mol Model       Date:  2014-03-28       Impact factor: 1.810

3.  Competition between π-hole interaction and hydrogen bond in the complexes of F2XO (X = C and Si) and HCN.

Authors:  Xin Guo; Lishui Cao; Qingzhong Li; Wenzuo Li; Jianbo Cheng
Journal:  J Mol Model       Date:  2014-10-23       Impact factor: 1.810

4.  Development of a pharmacophore for cruzain using oxadiazoles as virtual molecular probes: quantitative structure-activity relationship studies.

Authors:  Anacleto S de Souza; Marcelo T de Oliveira; Adriano D Andricopulo
Journal:  J Comput Aided Mol Des       Date:  2017-08-09       Impact factor: 3.686

Review 5.  Conformational energy range of ligands in protein crystal structures: The difficult quest for accurate understanding.

Authors:  Megan L Peach; Raul E Cachau; Marc C Nicklaus
Journal:  J Mol Recognit       Date:  2017-02-24       Impact factor: 2.137

6.  Quantitative model for rationalizing solvent effect in noncovalent CH-Aryl interactions.

Authors:  Bright U Emenike; Sara N Bey; Brianna C Bigelow; Srinivas V S Chakravartula
Journal:  Chem Sci       Date:  2015-11-17       Impact factor: 9.825

7.  Multiple CH/π Interactions Maintain the Binding of Aflatoxin B₁ in the Active Cavity of Human Cytochrome P450 1A2.

Authors:  Jun Wu; Sisi Zhu; Yunbo Wu; Tianqing Jiang; Lingling Wang; Jun Jiang; Jikai Wen; Yiqun Deng
Journal:  Toxins (Basel)       Date:  2019-03-12       Impact factor: 4.546

8.  Influence of conventional hydrogen bonds in the intercalation of phenanthroline derivatives with DNA: The important role of the sugar and phosphate backbone.

Authors:  Ángel Sánchez-González; Pierre Grenut; Adrià Gil
Journal:  J Comput Chem       Date:  2022-03-17       Impact factor: 3.672

9.  Insights into molecular recognition from the crystal structures of p-tert-butyl-calix[6]arene complexed with different solvents.

Authors:  Maura Malinska
Journal:  IUCrJ       Date:  2021-11-16       Impact factor: 4.769

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.