Literature DB >> 16908088

Charging it up: global analysis of protein phosphorylation.

Jason Ptacek1, Michael Snyder.   

Abstract

Protein phosphorylation affects most, if not all, cellular activities in eukaryotes and is essential for cell proliferation and development. An estimated 30% of cellular proteins are phosphorylated, representing the phosphoproteome, and phosphorylation can alter a protein's function, activity, localization and stability. Recent studies for large-scale identification of phosphosites using mass spectrometry are revealing the components of the phosphoproteome. The development of new tools, such as kinase assays using modified kinases or protein microarrays, enables rapid kinase substrate identification. The dynamics of specific phosphorylation events can now be monitored using mass spectrometry, single-cell analysis of flow cytometry, or fluorescent reporters. Together, these techniques are beginning to elucidate cellular processes and pathways regulated by phosphorylation, in addition to global regulatory networks.

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Year:  2006        PMID: 16908088     DOI: 10.1016/j.tig.2006.08.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  38 in total

Review 1.  "Without Ub I am nothing": NEMO as a multifunctional player in ubiquitin-mediated control of NF-kappaB activation.

Authors:  Jérémie Gautheron; Gilles Courtois
Journal:  Cell Mol Life Sci       Date:  2010-05-26       Impact factor: 9.261

2.  Covalent capture of kinase-specific phosphopeptides reveals Cdk1-cyclin B substrates.

Authors:  Justin D Blethrow; Joseph S Glavy; David O Morgan; Kevan M Shokat
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-30       Impact factor: 11.205

3.  Distal recognition sites in substrates are required for efficient phosphorylation by the cAMP-dependent protein kinase.

Authors:  Stephen J Deminoff; Vidhya Ramachandran; Paul K Herman
Journal:  Genetics       Date:  2009-04-13       Impact factor: 4.562

4.  High-resolution mass spectrometry analysis of protein oxidations and resultant loss of function.

Authors:  Stephen Barnes; Erin M Shonsey; Shannon M Eliuk; David Stella; Kerri Barrett; Om P Srivastava; Helen Kim; Matthew B Renfrow
Journal:  Biochem Soc Trans       Date:  2008-10       Impact factor: 5.407

5.  Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification.

Authors:  Peter J Ulintz; Anastasia K Yocum; Bernd Bodenmiller; Ruedi Aebersold; Philip C Andrews; Alexey I Nesvizhskii
Journal:  J Proteome Res       Date:  2009-02       Impact factor: 4.466

6.  Molecular cloning and mRNA expression of M-phase phosphoprotein 6 gene in black tiger shrimp (Penaeus monodon).

Authors:  Jun Zhou; Lihua Qiu; Shigui Jiang; Falin Zhou; Jianhua Huang; Lishi Yang; Tianfeng Su; Dianchang Zhang
Journal:  Mol Biol Rep       Date:  2012-10-14       Impact factor: 2.316

7.  Characterizing tyrosine phosphorylation signaling in lung cancer using SH2 profiling.

Authors:  Kazuya Machida; Steven Eschrich; Jiannong Li; Yun Bai; John Koomen; Bruce J Mayer; Eric B Haura
Journal:  PLoS One       Date:  2010-10-19       Impact factor: 3.240

Review 8.  The ubiquitin landscape at DNA double-strand breaks.

Authors:  Troy E Messick; Roger A Greenberg
Journal:  J Cell Biol       Date:  2009-11-02       Impact factor: 10.539

9.  Detecting the site of phosphorylation in phosphopeptides without loss of phosphate group using MALDI TOF mass spectrometry.

Authors:  Medicharla V Jagannadham; Ramakrishnan Nagaraj
Journal:  Anal Chem Insights       Date:  2008-02-26

10.  Cooperativity within proximal phosphorylation sites is revealed from large-scale proteomics data.

Authors:  Regev Schweiger; Michal Linial
Journal:  Biol Direct       Date:  2010-01-26       Impact factor: 4.540

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