Literature DB >> 16907137

Simple data-driven models of intracellular calcium dynamics with predictive power.

Alejandra C Ventura1, Luciana Bruno, Silvina Ponce Dawson.   

Abstract

Biology is complex. However, it is not clear how much of this complexity must necessarily translate into complicated mathematical models of biological processes. Simple models can be appealing to physicists but are usually deceiving for biologists. Complicated models, on the other hand, depend on too many parameters whose values are frequently unknown. Therefore, complicated models, although in principle more realistic, can lead to erroneous results if they are sensitive to these unknown parameter values. Intracellular calcium signals provide an example of utmost biological importance in which the issue of "simple vs complex" can be explored. In this paper we show that simple models describing the dynamics of intracellular calcium can be directly inferred from experimental data, without no a priori information on unknown parameters. A similar approach can be followed to study other reaction-diffusion systems. In spite of their simplicity, these models can provide quantitative information on some of the processes that shape calcium signals, such as the calcium current that underlies an experimental observation. This shows that simple models of biological systems are not limited to qualitative descriptions.

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Year:  2006        PMID: 16907137     DOI: 10.1103/PhysRevE.74.011917

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Quantifying calcium fluxes underlying calcium puffs in Xenopus laevis oocytes.

Authors:  Luciana Bruno; Guillermo Solovey; Alejandra C Ventura; Sheila Dargan; Silvina Ponce Dawson
Journal:  Cell Calcium       Date:  2010-01-25       Impact factor: 6.817

Review 2.  Computational biology in Argentina.

Authors:  Sebastian Bassi; Virginia González; Gustavo Parisi
Journal:  PLoS Comput Biol       Date:  2007-12       Impact factor: 4.475

3.  Role of time delay on intracellular calcium dynamics driven by non-Gaussian noises.

Authors:  Wei-Long Duan; Chunhua Zeng
Journal:  Sci Rep       Date:  2016-04-28       Impact factor: 4.379

  3 in total

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