Literature DB >> 16904351

Construction of a contig of BAC clones spanning the region of the apple scab avirulence gene AvrVg.

G A L Broggini1, B Le Cam, L Parisi, C Wu, H-B Zhang, C Gessler, A Patocchi.   

Abstract

The ascomycete Venturia inaequalis, causal pathogen of apple scab, underlies a gene-for-gene relationship with its host plant apple (Malus spp.). 'Golden Delicious', one of the most common cultivated apples in the world, carries the ephemeral resistance gene Vg. Avirulence gene AvrVg, matching resistance gene Vg has recently been mapped on the V. inaequalis genome. In this paper, we present the construction of a BAC library from a V. inaequalis AvrVg isolate. The library is composed of 7680 clones, with an average insert size of 80kb. By hybridization, it has been estimated that the library contains six haploid genome equivalents. Thus the V. inaequalis genome can be predicted to be approximately 100Mb in size. A chromosome walk, starting from the marker VirQ5 co-segregating with AvrVg, has been performed using the BAC library. Twelve BAC clones were identified during four steps of the chromosome walking. The size of the resulting contig is approximately 330kb.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16904351     DOI: 10.1016/j.fgb.2006.07.001

Source DB:  PubMed          Journal:  Fungal Genet Biol        ISSN: 1087-1845            Impact factor:   3.495


  6 in total

1.  Venturia inaequalis: the causal agent of apple scab.

Authors:  Joanna K Bowen; Carl H Mesarich; Vincent G M Bus; Robert M Beresford; Kim M Plummer; Matthew D Templeton
Journal:  Mol Plant Pathol       Date:  2010-08-26       Impact factor: 5.663

2.  Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map.

Authors:  Jean-Marc Celton; Alan Christoffels; Daniel J Sargent; Xiangming Xu; D Jasper G Rees
Journal:  BMC Biol       Date:  2010-12-30       Impact factor: 7.431

Review 3.  The Venturia apple pathosystem: pathogenicity mechanisms and plant defense responses.

Authors:  Gopaljee Jha; Karnika Thakur; Priyanka Thakur
Journal:  J Biomed Biotechnol       Date:  2010-01-28

4.  Epigenetic control of effector gene expression in the plant pathogenic fungus Leptosphaeria maculans.

Authors:  Jessica L Soyer; Mennat El Ghalid; Nicolas Glaser; Bénédicte Ollivier; Juliette Linglin; Jonathan Grandaubert; Marie-Hélène Balesdent; Lanelle R Connolly; Michael Freitag; Thierry Rouxel; Isabelle Fudal
Journal:  PLoS Genet       Date:  2014-03-06       Impact factor: 5.917

5.  Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range.

Authors:  Cecilia H Deng; Kim M Plummer; Darcy A B Jones; Carl H Mesarich; Jason Shiller; Adam P Taranto; Andrew J Robinson; Patrick Kastner; Nathan E Hall; Matthew D Templeton; Joanna K Bowen
Journal:  BMC Genomics       Date:  2017-05-02       Impact factor: 3.969

6.  De novo transcriptome sequencing and analysis for Venturia inaequalis, the devastating apple scab pathogen.

Authors:  Karnika Thakur; Vandna Chawla; Shammi Bhatti; Mohit Kumar Swarnkar; Jagdeep Kaur; Ravi Shankar; Gopaljee Jha
Journal:  PLoS One       Date:  2013-01-17       Impact factor: 3.240

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.