Literature DB >> 16904310

Transcriptional control thrown for a loop.

Peter Fraser1.   

Abstract

The relationships among in vivo chromatin structures, chromosome organization and genome function must be understood in order to reveal the hidden regulatory information in our genomes. Rather than being stable architectural features, it appears that chromatin and chromosome conformations at all levels are highly dynamic, which is the key to their function. Studies in recent years have elucidated long-range interactions or folded chromatin conformations that play significant roles in gene regulation. Most recently, intrachromosomal associations and co-associations with shared nuclear transcription compartments have been discovered in mammals, with the potential to greatly expand our view of how the genome is regulated.

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Year:  2006        PMID: 16904310     DOI: 10.1016/j.gde.2006.08.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  46 in total

Review 1.  Safe harbours for the integration of new DNA in the human genome.

Authors:  Michel Sadelain; Eirini P Papapetrou; Frederic D Bushman
Journal:  Nat Rev Cancer       Date:  2011-12-01       Impact factor: 60.716

Review 2.  Organization of transcription.

Authors:  Lyubomira Chakalova; Peter Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-07-28       Impact factor: 10.005

3.  Integrating one-dimensional and three-dimensional maps of genomes.

Authors:  Natalia Naumova; Job Dekker
Journal:  J Cell Sci       Date:  2010-06-15       Impact factor: 5.285

Review 4.  Control of eukaryotic gene expression: gene loops and transcriptional memory.

Authors:  Michael Hampsey; Badri Nath Singh; Athar Ansari; Jean-Philippe Lainé; Shankarling Krishnamurthy
Journal:  Adv Enzyme Regul       Date:  2010-10-29

5.  Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus.

Authors:  Huie Jing; Christopher R Vakoc; Lei Ying; Sean Mandat; Hongxin Wang; Xingwu Zheng; Gerd A Blobel
Journal:  Mol Cell       Date:  2008-02-01       Impact factor: 17.970

6.  CTCF-dependent enhancer-blocking by alternative chromatin loop formation.

Authors:  Chunhui Hou; Hui Zhao; Keiji Tanimoto; Ann Dean
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-12       Impact factor: 11.205

7.  Cross-talk between histone H3 tails produces cooperative nucleosome acetylation.

Authors:  Shanshan Li; Michael A Shogren-Knaak
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

8.  Transcription factors mediate long-range enhancer-promoter interactions.

Authors:  Ilias K Nolis; Daniel J McKay; Eva Mantouvalou; Stavros Lomvardas; Menie Merika; Dimitris Thanos
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-18       Impact factor: 11.205

9.  Nuclear positional control of HIV transcription in 4D.

Authors:  Alessandro Marcello; Somdutta Dhir; Mariacarolina Dieudonné
Journal:  Nucleus       Date:  2010 Jan-Feb       Impact factor: 4.197

10.  Spatially confined folding of chromatin in the interphase nucleus.

Authors:  Julio Mateos-Langerak; Manfred Bohn; Wim de Leeuw; Osdilly Giromus; Erik M M Manders; Pernette J Verschure; Mireille H G Indemans; Hinco J Gierman; Dieter W Heermann; Roel van Driel; Sandra Goetze
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-20       Impact factor: 11.205

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