Literature DB >> 16903065

Evaluating the performance of species richness estimators: sensitivity to sample grain size.

Joaquín Hortal1, Paulo A V Borges, Clara Gaspar.   

Abstract

1. Fifteen species richness estimators (three asymptotic based on species accumulation curves, 11 nonparametric, and one based in the species-area relationship) were compared by examining their performance in estimating the total species richness of epigean arthropods in the Azorean Laurisilva forests. Data obtained with standardized sampling of 78 transects in natural forest remnants of five islands were aggregated in seven different grains (i.e. ways of defining a single sample): islands, natural areas, transects, pairs of traps, traps, database records and individuals to assess the effect of using different sampling units on species richness estimations. 2. Estimated species richness scores depended both on the estimator considered and on the grain size used to aggregate data. However, several estimators (ACE, Chao 1, Jackknifel and 2 and Bootstrap) were precise in spite of grain variations. Weibull and several recent estimators [proposed by Rosenzweig et al. (Conservation Biology, 2003, 17, 864-874), and Ugland et al. (Journal of Animal Ecology, 2003, 72, 888-897)] performed poorly. 3. Estimations developed using the smaller grain sizes (pair of traps, traps, records and individuals) presented similar scores in a number of estimators (the above-mentioned plus ICE, Chao2, Michaelis-Menten, Negative Exponential and Clench). The estimations from those four sample sizes were also highly correlated. 4. Contrary to other studies, we conclude that most species richness estimators may be useful in biodiversity studies. Owing to their inherent formulas, several nonparametric and asymptotic estimators present insensitivity to differences in the way the samples are aggregated. Thus, they could be used to compare species richness scores obtained from different sampling strategies. Our results also point out that species richness estimations coming from small grain sizes can be directly compared and other estimators could give more precise results in those cases. We propose a decision framework based on our results and on the literature to assess which estimator should be used to compare species richness scores of different sites, depending on the grain size of the original data, and of the kind of data available (species occurrence or abundance data).

Entities:  

Mesh:

Year:  2006        PMID: 16903065     DOI: 10.1111/j.1365-2656.2006.01048.x

Source DB:  PubMed          Journal:  J Anim Ecol        ISSN: 0021-8790            Impact factor:   5.091


  55 in total

1.  Mangrove bacterial richness.

Authors:  Newton Cm Gomes; Daniel Fr Cleary; Ricardo Calado; Rodrigo Costa
Journal:  Commun Integr Biol       Date:  2011-07-01

2.  Evaluation of species richness estimators in studies of diversity involving two larval digenean communities parasitizing snail hosts.

Authors:  Matías J Merlo; Manuela Parietti; Jorge A Etchegoin
Journal:  Parasitol Res       Date:  2010-07-22       Impact factor: 2.289

3.  Changes in species diversity and size composition in the Firth of Clyde demersal fish community (1927-2009).

Authors:  M R Heath; D C Speirs
Journal:  Proc Biol Sci       Date:  2011-07-06       Impact factor: 5.349

4.  Long-term declines in bird populations in tropical agricultural countryside.

Authors:  Çağan H Şekercioğlu; Chase D Mendenhall; Federico Oviedo-Brenes; Joshua J Horns; Paul R Ehrlich; Gretchen C Daily
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-29       Impact factor: 11.205

5.  Using species spectra to evaluate plant community conservation value along a gradient of anthropogenic disturbance.

Authors:  José A P Marcelino; Luís Silva; Patricia V Garcia; Everett Weber; António O Soares
Journal:  Environ Monit Assess       Date:  2012-12-07       Impact factor: 2.513

6.  Geothermal activity helps life survive glacial cycles.

Authors:  Ceridwen I Fraser; Aleks Terauds; John Smellie; Peter Convey; Steven L Chown
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-10       Impact factor: 11.205

7.  Lyme disease risk not amplified in a species-poor vertebrate community: similar Borrelia burgdorferi tick infection prevalence and OspC genotype frequencies.

Authors:  S L States; R J Brinkerhoff; G Carpi; T K Steeves; C Folsom-O'Keefe; M DeVeaux; M A Diuk-Wasser
Journal:  Infect Genet Evol       Date:  2014-04-29       Impact factor: 3.342

8.  Pollinator diversity affects plant reproduction and recruitment: the tradeoffs of generalization.

Authors:  José M Gómez; Jordi Bosch; Francisco Perfectti; Juande Fernández; Mohamed Abdelaziz
Journal:  Oecologia       Date:  2007-06-19       Impact factor: 3.225

9.  Yeasts Associated with Culex pipiens and Culex theileri Mosquito Larvae and the Effect of Selected Yeast Strains on the Ontogeny of Culex pipiens.

Authors:  A Steyn; F Roets; A Botha
Journal:  Microb Ecol       Date:  2015-11-14       Impact factor: 4.552

10.  Species diversity and distribution patterns of the ants of Amazonian Ecuador.

Authors:  Kari T Ryder Wilkie; Amy L Mertl; James F A Traniello
Journal:  PLoS One       Date:  2010-10-01       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.