Literature DB >> 16902034

Dyadobacter ginsengisoli sp. nov., isolated from soil of a ginseng field.

Qing-Mei Liu1, Wan-Taek Im1, Myungjin Lee2,1, Deok-Chun Yang3, Sung-Taik Lee1.   

Abstract

A Gram-negative, aerobic, non-motile, non-spore-forming and rod-shaped bacterium, strain Gsoil 043(T), was isolated from soil from a ginseng field in Pocheon province, South Korea. The novel isolate was characterized in order to determine its taxonomic position. On the basis of 16S rRNA gene sequence similarity, strain Gsoil 043(T) was shown to belong to the family 'Flexibacteraceae' and was related to Dyadobacter fermentans (96.7 %), Dyadobacter crusticola (96.3 %) and Dyadobacter hamtensis (95.8 %). The 16S rRNA gene sequence similarity of the novel strain to other recognized species within the family 'Flexibacteraceae' was less than 87.0 %. The G+C content of genomic DNA was 48 mol%. Phenotypic and chemotaxonomic data (major menaquinone, MK-7; major fatty acids, C(16 : 1)omega7c, iso-C(15 : 0) and C(16 : 0)) supported the affiliation of strain Gsoil 043(T) to the genus Dyadobacter. The results of physiological and biochemical tests enabled strain Gsoil 043(T) to be differentiated genotypically and phenotypically from the three Dyadobacter species with validly published names. The novel isolate therefore represents a novel species for which the name Dyadobacter ginsengisoli sp. nov. is proposed, with the type strain Gsoil 043(T) (=KCTC 12589(T)=LMG 23409(T)).

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Year:  2006        PMID: 16902034     DOI: 10.1099/ijs.0.64322-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  3 in total

1.  Complete genome sequence of Dyadobacter fermentans type strain (NS114).

Authors:  Elke Lang; Alla Lapidus; Olga Chertkov; Thomas Brettin; John C Detter; Cliff Han; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Feng Chen; Susan Lucas; Hope Tice; Jan-Fang Cheng; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Marcus Kopitz; David Bruce; Lynne Goodwin; Sam Pitluck; Galina Ovchinnikova; Amrita Pati; Natalia Ivanova; Konstantinos Mavrommatis; Amy Chen; Krishna Palaniappan; Patrick Chain; Jim Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Markus Göker; Manfred Rohde; Nikos C Kyrpides; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2009-09-24

2.  Genome-Based Taxonomic Classification of Bacteroidetes.

Authors:  Richard L Hahnke; Jan P Meier-Kolthoff; Marina García-López; Supratim Mukherjee; Marcel Huntemann; Natalia N Ivanova; Tanja Woyke; Nikos C Kyrpides; Hans-Peter Klenk; Markus Göker
Journal:  Front Microbiol       Date:  2016-12-20       Impact factor: 5.640

3.  Draft genome sequence of Dyadobacter tibetensis type strain (Y620-1) isolated from glacial ice.

Authors:  Yongqin Liu; Anyi Hu; Liang Shen; Tandong Yao; Nianzhi Jiao; Ninglian Wang; Baiqing Xu
Journal:  Stand Genomic Sci       Date:  2014-03-15
  3 in total

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