Literature DB >> 16901227

Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).

Eric W Deutsch1, Catherine A Ball, G Steven Bova, Alvis Brazma, Roger E Bumgarner, David Campbell, Helen C Causton, Jeff Christiansen, Duncan Davidson, Lillian J Eichner, Young Ah Goo, Sean Grimmond, Thorsten Henrich, Michael H Johnson, Martin Korb, Jason C Mills, Asa Oudes, Helen E Parkinson, Laura E Pascal, John Quackenbush, Mirana Ramialison, Martin Ringwald, Susanna-A Sansone, Gavin Sherlock, Christian J Stoeckert, Jason Swedlow, Ronald C Taylor, Laura Walashek, Yi Zhou, Alvin Y Liu, Lawrence D True.   

Abstract

We describe the creation process of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). Modeled after the existing minimum information specification for microarray data, we created a new specification for gene expression localization experiments, initially to facilitate data sharing within a consortium. After successful use within the consortium, the specification was circulated to members of the wider biomedical research community for comment and refinement. After a period of acquiring many new suggested requirements, it was necessary to enter a final phase of excluding those requirements that were deemed inappropriate as a minimum requirement for all experiments. The full specification will soon be published as a version 1.0 proposal to the community, upon which a more full discussion must take place so that the final specification may be achieved with the involvement of the whole community.

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Year:  2006        PMID: 16901227     DOI: 10.1089/omi.2006.10.205

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  8 in total

1.  Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).

Authors:  Eric W Deutsch; Catherine A Ball; Jules J Berman; G Steven Bova; Alvis Brazma; Roger E Bumgarner; David Campbell; Helen C Causton; Jeffrey H Christiansen; Fabrice Daian; Delphine Dauga; Duncan R Davidson; Gregory Gimenez; Young Ah Goo; Sean Grimmond; Thorsten Henrich; Bernhard G Herrmann; Michael H Johnson; Martin Korb; Jason C Mills; Asa J Oudes; Helen E Parkinson; Laura E Pascal; Nicolas Pollet; John Quackenbush; Mirana Ramialison; Martin Ringwald; David Salgado; Susanna-Assunta Sansone; Gavin Sherlock; Christian J Stoeckert; Jason Swedlow; Ronald C Taylor; Laura Walashek; Anthony Warford; David G Wilkinson; Yi Zhou; Leonard I Zon; Alvin Y Liu; Lawrence D True
Journal:  Nat Biotechnol       Date:  2008-03       Impact factor: 54.908

2.  MIFlowCyt: the minimum information about a Flow Cytometry Experiment.

Authors:  Jamie A Lee; Josef Spidlen; Keith Boyce; Jennifer Cai; Nicholas Crosbie; Mark Dalphin; Jeff Furlong; Maura Gasparetto; Michael Goldberg; Elizabeth M Goralczyk; Bill Hyun; Kirstin Jansen; Tobias Kollmann; Megan Kong; Robert Leif; Shannon McWeeney; Thomas D Moloshok; Wayne Moore; Garry Nolan; John Nolan; Janko Nikolich-Zugich; David Parrish; Barclay Purcell; Yu Qian; Biruntha Selvaraj; Clayton Smith; Olga Tchuvatkina; Anne Wertheimer; Peter Wilkinson; Christopher Wilson; James Wood; Robert Zigon; Richard H Scheuermann; Ryan R Brinkman
Journal:  Cytometry A       Date:  2008-10       Impact factor: 4.355

Review 3.  Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity.

Authors:  Josh Tycko; Vic E Myer; Patrick D Hsu
Journal:  Mol Cell       Date:  2016-08-04       Impact factor: 17.970

4.  A comparative gene expression database for invertebrates.

Authors:  Mattias Ormestad; Mark Q Martindale; Eric Röttinger
Journal:  Evodevo       Date:  2011-08-24       Impact factor: 2.250

5.  Roles for the stem cell associated intermediate filament Nestin in prostate cancer migration and metastasis.

Authors:  Wolfram Kleeberger; G Steven Bova; Matthew E Nielsen; Mehsati Herawi; Ai-Ying Chuang; Jonathan I Epstein; David M Berman
Journal:  Cancer Res       Date:  2007-10-01       Impact factor: 12.701

6.  FlyTED: the Drosophila Testis Gene Expression Database.

Authors:  Jun Zhao; Graham Klyne; Elizabeth Benson; Elin Gudmannsdottir; Helen White-Cooper; David Shotton
Journal:  Nucleic Acids Res       Date:  2009-11-24       Impact factor: 16.971

7.  TAMEE: data management and analysis for tissue microarrays.

Authors:  Gerhard G Thallinger; Kerstin Baumgartner; Martin Pirklbauer; Martina Uray; Elke Pauritsch; Gabor Mehes; Charles R Buck; Kurt Zatloukal; Zlatko Trajanoski
Journal:  BMC Bioinformatics       Date:  2007-03-07       Impact factor: 3.169

8.  4DXpress: a database for cross-species expression pattern comparisons.

Authors:  Yannick Haudry; Hugo Berube; Ivica Letunic; Paul-Daniel Weeber; Julien Gagneur; Charles Girardot; Misha Kapushesky; Detlev Arendt; Peer Bork; Alvis Brazma; Eileen E M Furlong; Joachim Wittbrodt; Thorsten Henrich
Journal:  Nucleic Acids Res       Date:  2007-10-04       Impact factor: 16.971

  8 in total

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