Literature DB >> 16898697

Quantum mechanical analysis of 1,2-ethanediol conformational energetics and hydrogen bonding.

Olgun Guvench1, Alexander D Mackerell.   

Abstract

A proper understanding of the conformational energetics of 1,2-ethanediol (ethylene glycol) is important to the construction of molecular mechanics force fields for the treatment of carbohydrates since these biologically important molecules have a prevalence of vicinal hydroxyl groups. In the present study, quantum mechanical analysis of the 10 unique minimum-energy conformations of ethylene glycol is performed by using 10 model chemistries ranging from HF/6-311++G(d,p) up to a hybrid method that approximates CCSD(T)/cc-pVQZ. In addition, natural bond orbital (NBO) analysis of these conformations with deletion of pairings of CO bond/antibonding and lone pair/antibonding orbitals is used to investigate contributions from the "gauche" effect to ethylene glycol conformational energetics. MP2 with the "correlation consistent" basis sets and DFT/6-311++G(d,p) do the best job of matching the approximate CCSD(T)/cc-pVQZ energies while MP2/6-31G(d) and Hartree-Fock both fare poorly. NBO analysis shows the conformational energies to be independent of the deletion of matrix elements associated with (i) CO bonding and antibonding orbital interactions and (ii) lone pair and antibonding orbital interactions, whereas the energetic ordering correlates with geometric parameters consistent with internal hydrogen bonds. Thus, the present results suggest that standard molecular mechanics potential energy functional forms, which lack explicit terms to account for stereoelectronic effects, are appropriate for carbohydrates.

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Year:  2006        PMID: 16898697     DOI: 10.1021/jp0623241

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  9 in total

1.  CHARMM additive all-atom force field for carbohydrate derivatives and its utility in polysaccharide and carbohydrate-protein modeling.

Authors:  Olgun Guvench; Sairam S Mallajosyula; E Prabhu Raman; Elizabeth Hatcher; Kenno Vanommeslaeghe; Theresa J Foster; Francis W Jamison; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2011-10-11       Impact factor: 6.006

2.  Fluorosugar chain termination agents as probes of the sequence specificity of a carbohydrate polymerase.

Authors:  Christopher D Brown; Max S Rusek; Laura L Kiessling
Journal:  J Am Chem Soc       Date:  2012-04-10       Impact factor: 15.419

3.  CHARMM Additive All-Atom Force Field for Glycosidic Linkages between Hexopyranoses.

Authors:  Olgun Guvench; Elizabeth R Hatcher; Richard M Venable; Richard W Pastor; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2009-08-20       Impact factor: 6.006

4.  CHARMM additive all-atom force field for aldopentofuranoses, methyl-aldopentofuranosides, and fructofuranose.

Authors:  Elizabeth Hatcher; Olgun Guvench; Alexander D Mackerell
Journal:  J Phys Chem B       Date:  2009-09-17       Impact factor: 2.991

5.  Polarizable empirical force field for acyclic polyalcohols based on the classical Drude oscillator.

Authors:  Xibing He; Pedro E M Lopes; Alexander D Mackerell
Journal:  Biopolymers       Date:  2013-10       Impact factor: 2.505

6.  Additive empirical force field for hexopyranose monosaccharides.

Authors:  Olgun Guvench; Shannon N Greene; Ganesh Kamath; John W Brady; Richard M Venable; Richard W Pastor; Alexander D Mackerell
Journal:  J Comput Chem       Date:  2008-11-30       Impact factor: 3.376

7.  CHARMM Additive All-Atom Force Field for Acyclic Polyalcohols, Acyclic Carbohydrates and Inositol.

Authors:  Elizabeth Hatcher; Olgun Guvench; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2009-04-27       Impact factor: 6.006

Review 8.  Revealing the Mechanisms of Protein Disorder and N-Glycosylation in CD44-Hyaluronan Binding Using Molecular Simulation.

Authors:  Olgun Guvench
Journal:  Front Immunol       Date:  2015-06-16       Impact factor: 7.561

9.  A Symmetric Recognition Motif between Vicinal Diols: The Fourfold Grip in Ethylene Glycol Dimer.

Authors:  Franz Kollipost; Katharina E Otto; Martin A Suhm
Journal:  Angew Chem Int Ed Engl       Date:  2016-03-01       Impact factor: 15.336

  9 in total

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