Literature DB >> 16891171

Indirect readout of DNA sequence by proteins: the roles of DNA sequence-dependent intrinsic and extrinsic forces.

Gerald B Koudelka1, Steven A Mauro, Mihai Ciubotaru.   

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Year:  2006        PMID： 16891171     DOI： 10.1016/S0079-6603(06)81004-4

Source DB:  PubMed          Journal:  Prog Nucleic Acid Res Mol Biol        ISSN： 0079-6603


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  21 in total

1.  Functional specificity of a protein-DNA complex mediated by two arginines bound to the minor groove.

Authors:  Jesús Mendieta; Laura Pérez-Lago; Margarita Salas; Ana Camacho
Journal:  J Bacteriol       Date:  2012-06-29       Impact factor: 3.490

2.  DNA distortion and specificity in a sequence-specific endonuclease.

Authors:  Andrea C Babic; Elizabeth J Little; Veena M Manohar; Jurate Bitinaite; Nancy C Horton
Journal:  J Mol Biol       Date:  2008-08-22       Impact factor: 5.469

3.  Transient Hoogsteen base pairs in canonical duplex DNA.

Authors:  Evgenia N Nikolova; Eunae Kim; Abigail A Wise; Patrick J O'Brien; Ioan Andricioaei; Hashim M Al-Hashimi
Journal:  Nature       Date:  2011-01-26       Impact factor: 49.962

Review 4.  Molecular interactions and protein-induced DNA hairpin in the transcriptional control of bacteriophage ø29 DNA.

Authors:  Ana Camacho; Margarita Salas
Journal:  Int J Mol Sci       Date:  2010-12-13       Impact factor: 5.923

5.  Segrosome assembly at the pliable parH centromere.

Authors:  Meiyi Wu; Massimiliano Zampini; Malte Bussiek; Christian Hoischen; Stephan Diekmann; Finbarr Hayes
Journal:  Nucleic Acids Res       Date:  2011-03-04       Impact factor: 16.971

6.  On the molecular basis of uracil recognition in DNA: comparative study of T-A versus U-A structure, dynamics and open base pair kinetics.

Authors:  Elisa Fadda; Régis Pomès
Journal:  Nucleic Acids Res       Date:  2010-09-28       Impact factor: 16.971

7.  Structural basis for the cooperative DNA recognition by Smad4 MH1 dimers.

Authors:  Nithya Baburajendran; Ralf Jauch; Clara Yueh Zhen Tan; Kamesh Narasimhan; Prasanna R Kolatkar
Journal:  Nucleic Acids Res       Date:  2011-06-30       Impact factor: 16.971

8.  Determinants of bacteriophage 933W repressor DNA binding specificity.

Authors:  Tammy J Bullwinkle; Daniel Samorodnitsky; Rayna C Rosati; Gerald B Koudelka
Journal:  PLoS One       Date:  2012-04-03       Impact factor: 3.240

9.  Thermodynamics of DNA target site recognition by homing endonucleases.

Authors:  Jennifer H Eastberg; Audrey McConnell Smith; Lei Zhao; Justin Ashworth; Betty W Shen; Barry L Stoddard
Journal:  Nucleic Acids Res       Date:  2007-10-18       Impact factor: 16.971

10.  Molecular dynamics of a kappaB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation.

Authors:  Cameron Mura; J Andrew McCammon
Journal:  Nucleic Acids Res       Date:  2008-07-24       Impact factor: 16.971
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