Literature DB >> 16890423

Understanding the cell in terms of structure and function: insights from structural genomics.

Daniel J Rigden1.   

Abstract

Structural genomics programs are only now moving into the large-scale production phase, yet have already produced around 2000 protein structures. Through a widespread if not exclusive emphasis on structural novelty, our knowledge of the protein fold universe is improving rapidly. With this information comes the challenge of structure-based function annotation for the many target proteins about which little or nothing is known. Recent years have therefore seen the emergence of impressively diverse bioinformatics approaches to predict the function of a protein structure. Attention is now turning to means of combining these predictions with information from various other sources.

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Year:  2006        PMID: 16890423     DOI: 10.1016/j.copbio.2006.07.004

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  7 in total

1.  From complete genome sequence to 'complete' understanding?

Authors:  Michael Y Galperin; Eugene V Koonin
Journal:  Trends Biotechnol       Date:  2010-08       Impact factor: 19.536

Review 2.  New metrics for comparative genomics.

Authors:  Michael Y Galperin; Eugene Kolker
Journal:  Curr Opin Biotechnol       Date:  2006-09-15       Impact factor: 9.740

3.  Predicting nucleic acid binding interfaces from structural models of proteins.

Authors:  Iris Dror; Shula Shazman; Srayanta Mukherjee; Yang Zhang; Fabian Glaser; Yael Mandel-Gutfreund
Journal:  Proteins       Date:  2011-11-16

4.  Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.

Authors:  Drew H Bryant; Mark Moll; Brian Y Chen; Viacheslav Y Fofanov; Lydia E Kavraki
Journal:  BMC Bioinformatics       Date:  2010-05-11       Impact factor: 3.169

5.  Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d.

Authors:  Andrew C Doxey; Zhenyu Cheng; Barbara A Moffatt; Brendan J McConkey
Journal:  BMC Struct Biol       Date:  2010-08-03

6.  LigASite--a database of biologically relevant binding sites in proteins with known apo-structures.

Authors:  Benoit H Dessailly; Marc F Lensink; Christine A Orengo; Shoshana J Wodak
Journal:  Nucleic Acids Res       Date:  2007-10-11       Impact factor: 16.971

7.  eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.

Authors:  Kengo Kinoshita; Yoichi Murakami; Haruki Nakamura
Journal:  Nucleic Acids Res       Date:  2007-06-12       Impact factor: 16.971

  7 in total

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