Literature DB >> 16888347

Methods for identifying and mapping recent segmental and gene duplications in eukaryotic genomes.

Razi Khaja1, Jeffrey R MacDonald, Junjun Zhang, Stephen W Scherer.   

Abstract

The aim of this chapter is to provide instruction for analyzing and mapping recent segmental and gene duplications in eukaryotic genomes. We describe a bioinformatics-based approach utilizing computational tools to manage eukaryotic genome sequences to characterize and understand the evolutionary fates and trajectories of duplicated genes. An introduction to bioinformatics tools and programs such as BLAST, Perl, BioPerl, and the GFF specification provides the necessary background to complete this analysis for any eukaryotic genome of interest.

Mesh：

Year:  2006        PMID： 16888347     DOI： 10.1385/1-59745-097-9:9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  5 in total

1.  Distribution and Functionality of Copy Number Variation across European Cattle Populations.

Authors:  Maulik Upadhyay; Vinicus H da Silva; Hendrik-Jan Megens; Marleen H P W Visker; Paolo Ajmone-Marsan; Valentin A Bâlteanu; Susana Dunner; Jose F Garcia; Catarina Ginja; Juha Kantanen; Martien A M Groenen; Richard P M A Crooijmans
Journal:  Front Genet       Date:  2017-08-23       Impact factor: 4.599

2.  Genome-wide characterization and expression profiling of HD-Zip gene family related to abiotic stress in cassava.

Authors:  Zehong Ding; Lili Fu; Yan Yan; Weiwei Tie; Zhiqiang Xia; Wenquan Wang; Ming Peng; Wei Hu; Jiaming Zhang
Journal:  PLoS One       Date:  2017-03-01       Impact factor: 3.240

3.  Analysis of Single Nucleotide Variants in CRISPR-Cas9 Edited Zebrafish Exomes Shows No Evidence of Off-Target Inflation.

Authors:  Marie R Mooney; Erica E Davis; Nicholas Katsanis
Journal:  Front Genet       Date:  2019-10-11       Impact factor: 4.599

4.  CNVs are associated with genomic architecture in a songbird.

Authors:  Vinicius H da Silva; Veronika N Laine; Mirte Bosse; Kees van Oers; Bert Dibbits; Marcel E Visser; Richard P M A Crooijmans; Martien A M Groenen
Journal:  BMC Genomics       Date:  2018-03-13       Impact factor: 3.969

5.  Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.

Authors:  Jean-Félix Dallery; Nicolas Lapalu; Antonios Zampounis; Sandrine Pigné; Isabelle Luyten; Joëlle Amselem; Alexander H J Wittenberg; Shiguo Zhou; Marisa V de Queiroz; Guillaume P Robin; Annie Auger; Matthieu Hainaut; Bernard Henrissat; Ki-Tae Kim; Yong-Hwan Lee; Olivier Lespinet; David C Schwartz; Michael R Thon; Richard J O'Connell
Journal:  BMC Genomics       Date:  2017-08-29       Impact factor: 3.969
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.