Literature DB >> 16884261

Influence of pyrene-labeling on fluid lipid membranes.

Jarmila Repáková1, Juha M Holopainen, Mikko Karttunen, Ilpo Vattulainen.   

Abstract

We elucidate the influence of pyrene-labeled phospholipids on the structural properties of a fluid dipalmitoylphosphatidylcholine lipid membrane. To this end, we employ extensive atomic-scale molecular dynamics simulations with varying concentrations of pyrene-linked lipids. We find pyrene labeling to perturb the membrane structure significantly in the vicinity of the probe, the correlation length in the bilayer plane being about 1.0-1.5 nm. The local perturbations lead to enhanced ordering and packing of lipid acyl chains located in the vicinity of the probe. Surprisingly, this holds true not only for lipids that reside in the same leaflet as the pyrene-labeled probe but also for lipids in the opposite monolayer. The latter is due to substantial interdigitation of the pyrene moiety into the opposite leaflet, suggesting that occasional excimer formation may take place for probes in different leaflets. As a related issue, we also discuss the location and conformational orientation of the pyrene moieties. In particular, the orientational distribution of pyrene turns out to be more broad and diverse than the distribution of the corresponding acyl tails of nonlabeled lipids.

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Year:  2006        PMID: 16884261     DOI: 10.1021/jp061300r

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  12 in total

1.  Partitioning and localization of environment-sensitive 2-(2'-pyridyl)- and 2-(2'-pyrimidyl)-indoles in lipid membranes: a joint refinement using fluorescence measurements and molecular dynamics simulations.

Authors:  Alexander Kyrychenko; Feiyue Wu; Randolph P Thummel; Jacek Waluk; Alexey S Ladokhin
Journal:  J Phys Chem B       Date:  2010-10-28       Impact factor: 2.991

2.  Amino-acid solvation structure in transmembrane helices from molecular dynamics simulations.

Authors:  Anna C V Johansson; Erik Lindahl
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

3.  Probing membrane order and topography in supported lipid bilayers by combined polarized total internal reflection fluorescence-atomic force microscopy.

Authors:  John Oreopoulos; Christopher M Yip
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

Review 4.  Fluorescent membrane probes' behavior in lipid bilayers: insights from molecular dynamics simulations.

Authors:  Luís M S Loura; J P Prates Ramalho
Journal:  Biophys Rev       Date:  2009-09-04

5.  Biophysical parameters of the Sec14 phospholipid exchange cycle - Effect of lipid packing in membranes.

Authors:  Taichi Sugiura; Hiroyuki Nakao; Keisuke Ikeda; Danish Khan; Aaron H Nile; Vytas A Bankaitis; Minoru Nakano
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-08-21       Impact factor: 3.747

6.  Limited perturbation of a DPPC bilayer by fluorescent lipid probes: a molecular dynamics study.

Authors:  David G Ackerman; Frederick A Heberle; Gerald W Feigenson
Journal:  J Phys Chem B       Date:  2013-04-19       Impact factor: 2.991

7.  Molecular dynamics simulations of DiI-C18(3) in a DPPC lipid bilayer.

Authors:  Ramachandra R Gullapalli; Melik C Demirel; Peter J Butler
Journal:  Phys Chem Chem Phys       Date:  2008-05-07       Impact factor: 3.676

Review 8.  Recent developments in molecular dynamics simulations of fluorescent membrane probes.

Authors:  Luís M S Loura; J P Prates Ramalho
Journal:  Molecules       Date:  2011-06-27       Impact factor: 4.411

Review 9.  Atomistic Monte Carlo simulation of lipid membranes.

Authors:  Daniel Wüstner; Heinz Sklenar
Journal:  Int J Mol Sci       Date:  2014-01-24       Impact factor: 5.923

Review 10.  Fluorescent Sterols and Cholesteryl Esters as Probes for Intracellular Cholesterol Transport.

Authors:  Katarzyna A Solanko; Maciej Modzel; Lukasz M Solanko; Daniel Wüstner
Journal:  Lipid Insights       Date:  2016-06-09
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