Literature DB >> 16882648

PYCHEM: a multivariate analysis package for python.

Roger M Jarvis1, David Broadhurst, Helen Johnson, Noel M O'Boyle, Royston Goodacre.   

Abstract

UNLABELLED: We have implemented a multivariate statistical analysis toolbox, with an optional standalone graphical user interface (GUI), using the Python scripting language. This is a free and open source project that addresses the need for a multivariate analysis toolbox in Python. Although the functionality provided does not cover the full range of multivariate tools that are available, it has a broad complement of methods that are widely used in the biological sciences. In contrast to tools like MATLAB, PyChem 2.0.0 is easily accessible and free, allows for rapid extension using a range of Python modules and is part of the growing amount of complementary and interoperable scientific software in Python based upon SciPy. One of the attractions of PyChem is that it is an open source project and so there is an opportunity, through collaboration, to increase the scope of the software and to continually evolve a user-friendly platform that has applicability across a wide range of analytical and post-genomic disciplines. AVAILABILITY: http://sourceforge.net/projects/pychem

Entities:  

Mesh:

Year:  2006        PMID: 16882648     DOI: 10.1093/bioinformatics/btl416

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  17 in total

1.  Tibetan Y-STR trait in the eleven regions of the Qinghai-Tibet Plateau.

Authors:  Gangqin Li; Yao Lin; Shengnan Lan; Jing Zou; Songfan Li; Feng Song; Yi Ye
Journal:  Int J Legal Med       Date:  2021-04-27       Impact factor: 2.686

2.  Phenotypic characterization of Shewanella oneidensis MR-1 under aerobic and anaerobic growth conditions by using fourier transform infrared spectroscopy and high-performance liquid chromatography analyses.

Authors:  Hui Wang; Katherine Hollywood; Roger M Jarvis; Jonathan R Lloyd; Royston Goodacre
Journal:  Appl Environ Microbiol       Date:  2010-07-30       Impact factor: 4.792

3.  Targeting sources of drought tolerance within an Avena spp. collection through multivariate approaches.

Authors:  Javier Sánchez-Martín; Luis A J Mur; Diego Rubiales; Elena Prats
Journal:  Planta       Date:  2012-07-24       Impact factor: 4.116

4.  Impact of silver(I) on the metabolism of Shewanella oneidensis.

Authors:  Hui Wang; Nicholas Law; Geraldine Pearson; Bart E van Dongen; Roger M Jarvis; Royston Goodacre; Jonathan R Lloyd
Journal:  J Bacteriol       Date:  2009-12-11       Impact factor: 3.490

Review 5.  Raman spectroscopy in head and neck cancer.

Authors:  Andrew T Harris; Andrew Rennie; Haroon Waqar-Uddin; Sarah R Wheatley; Samit K Ghosh; Dominic P Martin-Hirsch; Sheila E Fisher; Alec S High; Jennifer Kirkham; Tahwinder Upile
Journal:  Head Neck Oncol       Date:  2010-10-05

6.  ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites.

Authors:  Janez Konc; Benjamin T Miller; Tanja Štular; Samo Lešnik; H Lee Woodcock; Bernard R Brooks; Dušanka Janežič
Journal:  J Chem Inf Model       Date:  2015-11-09       Impact factor: 4.956

7.  The form of nitrogen nutrition affects resistance against Pseudomonas syringae pv. phaseolicola in tobacco.

Authors:  Kapuganti J Gupta; Yariv Brotman; Shruthi Segu; Tatiana Zeier; Jürgen Zeier; Stefan T Persijn; Simona M Cristescu; Frans J M Harren; Hermann Bauwe; Alisdair R Fernie; Werner M Kaiser; Luis A J Mur
Journal:  J Exp Bot       Date:  2012-12-10       Impact factor: 6.992

8.  Arsenate Impact on the Metabolite Profile, Production, and Arsenic Loading of Xylem Sap in Cucumbers (Cucumis sativus L.).

Authors:  M Kalle Uroic; Pascal Salaün; Andrea Raab; Jörg Feldmann
Journal:  Front Physiol       Date:  2012-04-02       Impact factor: 4.566

9.  Comparative metabolite fingerprinting of the rumen system during colonisation of three forage grass (Lolium perenne L.) varieties.

Authors:  Alison H Kingston-Smith; Teri E Davies; Pauline Rees Stevens; Luis A J Mur
Journal:  PLoS One       Date:  2013-11-27       Impact factor: 3.240

10.  Latitudinal variation in ambient UV-B radiation is an important determinant of Lolium perenne forage production, quality, and digestibility.

Authors:  David Comont; Ana Winters; Leonardo D Gomez; Simon J McQueen-Mason; Dylan Gwynn-Jones
Journal:  J Exp Bot       Date:  2013-04-11       Impact factor: 6.992

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