Literature DB >> 16880972

"Chromatomics" the analysis of the chromatome.

Axel Imhof1, Tiziana Bonaldi.   

Abstract

Chromatin is a highly complex mixture of proteins and DNA that is involved in the regulation and coordination of gene expression within the eukaryotic nucleus. Changes in chromatin structure can convey heritable changes of gene activity in response to external stimuli without altering the primary DNA sequence. This epigenetic inheritance of particular traits very likely plays a major role during evolutionary processes. It is however, still ill-defined how this non DNA-mediated inheritance is accomplished at a molecular level. The advent of new methods to systematically study genome-wide changes in chromatin condensation, DNA methylation levels, RNA synthesis and the association of specific proteins or protein modifications now allows a thorough investigation of changes in chromatin structure and function in response to environmental alterations. We would like to review some of these global approaches and to introduce the term "chromatomics" for the systematic analysis of the DNA, RNA and protein content of the genetic material in the eukaryotic nucleus.

Mesh:

Substances:

Year:  2005        PMID: 16880972     DOI: 10.1039/b502845k

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  6 in total

1.  Chromatin profiling of Epstein-Barr virus latency control region.

Authors:  Latasha Day; Charles M Chau; Michael Nebozhyn; Andrew J Rennekamp; Michael Showe; Paul M Lieberman
Journal:  J Virol       Date:  2007-04-04       Impact factor: 5.103

Review 2.  Epigenetic Factors in Schizophrenia: Mechanisms and Experimental Approaches.

Authors:  Melanie Föcking; Benjamin Doyle; Nayla Munawar; Eugene T Dillon; David Cotter; Gerard Cagney
Journal:  Mol Neuropsychiatry       Date:  2019-02-15

3.  Quantitative Proteomic Analysis of Replicative and Nonreplicative Forms Reveals Important Insights into Chromatin Biology of Trypanosoma cruzi.

Authors:  Teresa Cristina Leandro de Jesus; Simone Guedes Calderano; Francisca Nathalia de Luna Vitorino; Ricardo Pariona Llanos; Mariana de Camargo Lopes; Christiane Bezerra de Araújo; Otavio Henrique Thiemann; Marcelo da Silva Reis; Maria Carolina Elias; Julia Pinheiro Chagas da Cunha
Journal:  Mol Cell Proteomics       Date:  2016-11-16       Impact factor: 5.911

4.  Proteomic interrogation of human chromatin.

Authors:  Mariana P Torrente; Barry M Zee; Nicolas L Young; Richard C Baliban; Gary LeRoy; Christodoulos A Floudas; Sandra B Hake; Benjamin A Garcia
Journal:  PLoS One       Date:  2011-09-14       Impact factor: 3.240

5.  Mass spectrometry-based proteomics for the analysis of chromatin structure and dynamics.

Authors:  Monica Soldi; Alessandro Cuomo; Michael Bremang; Tiziana Bonaldi
Journal:  Int J Mol Sci       Date:  2013-03-06       Impact factor: 5.923

6.  The proteomic investigation of chromatin functional domains reveals novel synergisms among distinct heterochromatin components.

Authors:  Monica Soldi; Tiziana Bonaldi
Journal:  Mol Cell Proteomics       Date:  2013-01-14       Impact factor: 5.911

  6 in total

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