Literature DB >> 16880556

Crystallization and preliminary crystallographic analysis of type 1 RNase H from the hyperthermophilic archaeon Sulfolobus tokodaii 7.

Dong Ju You1, Hyongi Chon, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya.   

Abstract

Crystallization and preliminary crystallographic studies of type 1 RNase H from the hyperthermophilic archaeon Sulfolobus tokodaii 7 were performed. A crystal was grown at 277 K by the sitting-drop vapour-diffusion method. Native X-ray diffraction data were collected to 1.5 angstroms resolution using synchrotron radiation from station BL41XU at SPring-8. The crystal belongs to space group P4(3), with unit-cell parameters a = b = 39.21, c = 91.15 angstroms. Assuming the presence of one molecule in the asymmetric unit, the Matthews coefficient V(M) was calculated to be 2.1 angstroms3 Da(-1) and the solvent content was 40.5%. The structure of a selenomethionine Sto-RNase HI mutant obtained using a MAD data set is currently being analysed.

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Year:  2006        PMID: 16880556      PMCID: PMC2242919          DOI: 10.1107/S1744309106024420

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  29 in total

1.  Molecular diversities of RNases H.

Authors:  N Ohtani; M Haruki; M Morikawa; S Kanaya
Journal:  J Biosci Bioeng       Date:  1999       Impact factor: 2.894

2.  Crystal structures of RNase H bound to an RNA/DNA hybrid: substrate specificity and metal-dependent catalysis.

Authors:  Marcin Nowotny; Sergei A Gaidamakov; Robert J Crouch; Wei Yang
Journal:  Cell       Date:  2005-07-01       Impact factor: 41.582

3.  Crystal structure of archaeal RNase HII: a homologue of human major RNase H.

Authors:  L Lai; H Yokota; L W Hung; R Kim; S H Kim
Journal:  Structure       Date:  2000-08-15       Impact factor: 5.006

4.  Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts.

Authors:  Bjorn Rydberg; John Game
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-10       Impact factor: 11.205

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

7.  Saccharomyces cerevisiae RNase H(35) functions in RNA primer removal during lagging-strand DNA synthesis, most efficiently in cooperation with Rad27 nuclease.

Authors:  J Qiu; Y Qian; P Frank; U Wintersberger; B Shen
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

8.  Three-dimensional structure of ribonuclease H from E. coli.

Authors:  K Katayanagi; M Miyagawa; M Matsushima; M Ishikawa; S Kanaya; M Ikehara; T Matsuzaki; K Morikawa
Journal:  Nature       Date:  1990-09-20       Impact factor: 49.962

9.  Kinetic and stoichiometric analysis for the binding of Escherichia coli ribonuclease HI to RNA-DNA hybrids using surface plasmon resonance.

Authors:  M Haruki; E Noguchi; S Kanaya; R J Crouch
Journal:  J Biol Chem       Date:  1997-08-29       Impact factor: 5.157

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

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  3 in total

1.  Activity, stability, and structure of metagenome-derived LC11-RNase H1, a homolog of Sulfolobus tokodaii RNase H1.

Authors:  Tri-Nhan Nguyen; Clement Angkawidjaja; Eiko Kanaya; Yuichi Koga; Kazufumi Takano; Shigenori Kanaya
Journal:  Protein Sci       Date:  2012-03-02       Impact factor: 6.725

2.  Stabilization by fusion to the C-terminus of hyperthermophile Sulfolobus tokodaii RNase HI: a possibility of protein stabilization tag.

Authors:  Kazufumi Takano; Tomohiro Okamoto; Jun Okada; Shun-ichi Tanaka; Clement Angkawidjaja; Yuichi Koga; Shigenori Kanaya
Journal:  PLoS One       Date:  2011-01-19       Impact factor: 3.240

3.  Evolution and thermodynamics of the slow unfolding of hyperstable monomeric proteins.

Authors:  Jun Okada; Tomohiro Okamoto; Atsushi Mukaiyama; Takashi Tadokoro; Dong-Ju You; Hyongi Chon; Yuichi Koga; Kazufumi Takano; Shigenori Kanaya
Journal:  BMC Evol Biol       Date:  2010-07-09       Impact factor: 3.260

  3 in total

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