Literature DB >> 16879983

The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective.

Martijn S Luijsterburg1, Maarten C Noom, Gijs J L Wuite, Remus Th Dame.   

Abstract

The bacterial genome is folded into a compact structure called the nucleoid. Considerable compaction of the DNA molecule is required in order to reduce its volume below that of the cell. Several mechanisms, such as molecular crowding and DNA supercoiling contribute to the compactness of the nucleoid. Besides these mechanisms, a number of architectural proteins associate with the chromosomal DNA and cause it to fold into a compact structure by bridging, bending or wrapping DNA. In this review, we provide an overview of the major nucleoid-associated proteins from a structural perspective and we discuss their possible roles in dynamically shaping the bacterial nucleoid.

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Year:  2006        PMID: 16879983     DOI: 10.1016/j.jsb.2006.05.006

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  105 in total

1.  Nonspecific DNA binding and bending by HUαβ: interfaces of the three binding modes characterized by salt-dependent thermodynamics.

Authors:  Junseock Koh; Irina Shkel; Ruth M Saecker; M Thomas Record
Journal:  J Mol Biol       Date:  2011-04-12       Impact factor: 5.469

2.  DNA condensation by TmHU studied by optical tweezers, AFM and molecular dynamics simulations.

Authors:  Carolin Wagner; Carsten Olbrich; Hergen Brutzer; Mathias Salomo; Ulrich Kleinekathöfer; Ulrich F Keyser; Friedrich Kremer
Journal:  J Biol Phys       Date:  2010-10-09       Impact factor: 1.365

3.  Interactions of a replication initiator with histone H1-like proteins remodel the condensed mitochondrial genome.

Authors:  Irit Kapeller; Neta Milman; Nurit Yaffe; Joseph Shlomai
Journal:  J Biol Chem       Date:  2011-10-08       Impact factor: 5.157

Review 4.  Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity.

Authors:  Hernan G Garcia; Paul Grayson; Lin Han; Mandar Inamdar; Jané Kondev; Philip C Nelson; Rob Phillips; Jonathan Widom; Paul A Wiggins
Journal:  Biopolymers       Date:  2007-02-05       Impact factor: 2.505

5.  Structure of the cooperative Xis-DNA complex reveals a micronucleoprotein filament that regulates phage lambda intasome assembly.

Authors:  Mohamad A Abbani; Christie V Papagiannis; My D Sam; Duilio Cascio; Reid C Johnson; Robert T Clubb
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-07       Impact factor: 11.205

6.  Active transcription of rRNA operons condenses the nucleoid in Escherichia coli: examining the effect of transcription on nucleoid structure in the absence of transertion.

Authors:  Julio E Cabrera; Cedric Cagliero; Selwyn Quan; Catherine L Squires; Ding Jun Jin
Journal:  J Bacteriol       Date:  2009-04-24       Impact factor: 3.490

7.  Sequence-specific recognition of DNA by the C-terminal domain of nucleoid-associated protein H-NS.

Authors:  Marco Sette; Roberto Spurio; Edoardo Trotta; Cinzia Brandizi; Anna Brandi; Cynthia L Pon; Gaetano Barbato; Rolf Boelens; Claudio O Gualerzi
Journal:  J Biol Chem       Date:  2009-09-08       Impact factor: 5.157

8.  Protein-mediated molecular bridging: a key mechanism in biopolymer organization.

Authors:  Paul A Wiggins; Remus Th Dame; Maarten C Noom; Gijs J L Wuite
Journal:  Biophys J       Date:  2009-10-07       Impact factor: 4.033

9.  HupB, a nucleoid-associated protein of Mycobacterium tuberculosis, is modified by serine/threonine protein kinases in vivo.

Authors:  Meetu Gupta; Andaleeb Sajid; Kirti Sharma; Soumitra Ghosh; Gunjan Arora; Ramandeep Singh; Valakunja Nagaraja; Vibha Tandon; Yogendra Singh
Journal:  J Bacteriol       Date:  2014-05-09       Impact factor: 3.490

10.  Intrinsic curvature associated with the coordinately regulated anthrax toxin gene promoters.

Authors:  Maria Hadjifrangiskou; Theresa M Koehler
Journal:  Microbiology       Date:  2008-08       Impact factor: 2.777

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