Literature DB >> 16879877

Use of dried high-phenolic laden host leaves for virus and viroid preservation and detection by PCR methods.

Hikmet Murat Sipahioglu1, Mustafa Usta, Mustafa Ocak.   

Abstract

The efficiency of RNA extraction for Apricot latent virus (ApLV), Plum bark necrosis stem pitting associated virus (PBNSPaV), Prunus necrotic ring spot virus (PNRSV), Potato virus Y (PVY), and Apple scar skin viroid (ASSVd) from infected hosts is of great importance for molecular diagnosis by the polymerase chain reaction (PCR). A method is described for drying tissue to overcome phenolic inhibitors of viral RNA. This study showed that the infected host leaves, dried at 65 degrees C for 2 days and conserved at 4 degrees C in air proof conditions, serve as good sources for detection of viral and viroid pathogens by PCR methods. Preliminary results suggest that ApLV, PNRSV, PVY, and ASSVd were detected easily by reverse transcriptase-polymerase chain reaction (RT-PCR) and PBNSPaV by nested-RT-PCR with high amplification yields. No significant difference was observed between ethidium bromide-stained band profiles of dried compared to fresh leaves of infected samples. The RNA derived from dry leaf samples was suitable for detection studies. This simple and inexpensive method has proved very effective for long term conservation of virus and viroid isolates.

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Year:  2006        PMID: 16879877     DOI: 10.1016/j.jviromet.2006.06.009

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  4 in total

1.  A simple and inexpensive physical lysis method for DNA and RNA extraction from freshwater microalgae.

Authors:  Willy Yee; Ruzanna Abdul-Kadir; Leng May Lee; Benson Koh; Ying Shi Lee; Heng Yee Chan
Journal:  3 Biotech       Date:  2018-08-01       Impact factor: 2.406

2.  Genetic Diversity in the Coat Protein Genes of Prune dwarf virus Isolates from Sweet Cherry Growing in Turkey.

Authors:  Yusuf Öztürk; Bayram Çevik
Journal:  Plant Pathol J       Date:  2015-03-31       Impact factor: 1.795

3.  An Improved Method for the Extraction of Nucleic Acids from Plant Tissue without Grinding to Detect Plant Viruses and Viroids.

Authors:  Tatsuji Hataya
Journal:  Plants (Basel)       Date:  2021-12-06

4.  A universal oligonucleotide microarray with a minimal number of probes for the detection and identification of viroids at the genus level.

Authors:  Yongjiang Zhang; Jun Yin; Dongmei Jiang; Yanyan Xin; Fang Ding; Ziniu Deng; Guoping Wang; Xianfeng Ma; Fang Li; Guifen Li; Mingfu Li; Shifang Li; Shuifang Zhu
Journal:  PLoS One       Date:  2013-05-29       Impact factor: 3.240

  4 in total

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