Literature DB >> 16868936

National and ethnic mutation databases: recording populations' genography.

George P Patrinos1.   

Abstract

Genetic databases are gradually assuming an increasing importance in all areas of health care. The national and ethnic mutation databases (NEMDBs) are continuously updated mutation depositories, recording extensive information over the described genetic heterogeneity of an ethnic group or population. Together with the central and locus-specific databases, those resources not only enhance awareness of the various genetic disorders but also facilitate the provision of genetic services and provide useful insights into the genographic history of human populations. Fifteen independent NEMDBs devoted to the documentation of the extant genetic heterogeneity in various population groups within 57 different countries were assessed; 13 of the NEMDBs were fully functional. The contents of the 13 fully functional NEMDBs were thoroughly analyzed for the presence or absence of 39 criteria, pertaining database general information, operating platform, data source and submission, and querying capacity. This study provides a strong case for uniformity of data to make the NEMDBs content maximally useful. In this direction, a hypothetical content for the ideal NEMDB is derived, which is currently being incorporated in an upgraded version of the ETHNOS NEMDB development and curation software, as well as a community structure that would enhance the chances of mutation frequency capture and documentation in human populations. The ultimate goal is that interested parties and granting bodies will assist in achieving the vision of a comprehensive resource that collects and displays all population-specific genetic information discovered. (c) 2006 Wiley-Liss, Inc.

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Year:  2006        PMID: 16868936     DOI: 10.1002/humu.20376

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  10 in total

1.  A new scientific journal linked to a genetic database: towards a novel publication modality.

Authors:  George P Patrinos; Emanuel F Petricoin
Journal:  Hum Genomics Proteomics       Date:  2008-11-17

2.  Practical guidelines addressing ethical issues pertaining to the curation of human locus-specific variation databases (LSDBs).

Authors:  Sue Povey; Aida I Al Aqeel; Anne Cambon-Thomsen; Raymond Dalgleish; Johan T den Dunnen; Helen V Firth; Marc S Greenblatt; Carol Isaacson Barash; Michael Parker; George P Patrinos; Judith Savige; Maria-Jesus Sobrido; Ingrid Winship; Richard G H Cotton
Journal:  Hum Mutat       Date:  2010-11       Impact factor: 4.878

3.  The Moroccan Genetic Disease Database (MGDD): a database for DNA variations related to inherited disorders and disease susceptibility.

Authors:  Hicham Charoute; Halima Nahili; Omar Abidi; Khalid Gabi; Hassan Rouba; Malika Fakiri; Abdelhamid Barakat
Journal:  Eur J Hum Genet       Date:  2013-07-17       Impact factor: 4.246

4.  ETHNOS : A versatile electronic tool for the development and curation of national genetic databases.

Authors:  Sjozef van Baal; Joël Zlotogora; George Lagoumintzis; Vassiliki Gkantouna; Ioannis Tzimas; Konstantinos Poulas; Athanassios Tsakalidis; Giovanni Romeo; George P Patrinos
Journal:  Hum Genomics       Date:  2010-06       Impact factor: 4.639

5.  FINDbase: a worldwide database for genetic variation allele frequencies updated.

Authors:  Marianthi Georgitsi; Emmanouil Viennas; Dimitris I Antoniou; Vassiliki Gkantouna; Sjozef van Baal; Emanuel F Petricoin; Konstantinos Poulas; Giannis Tzimas; George P Patrinos
Journal:  Nucleic Acids Res       Date:  2010-11-27       Impact factor: 16.971

6.  Recommendations for genetic variation data capture in developing countries to ensure a comprehensive worldwide data collection.

Authors:  George P Patrinos; Jumana Al Aama; Aida Al Aqeel; Fahd Al-Mulla; Joseph Borg; Andrew Devereux; Alex E Felice; Finlay Macrae; Makia J Marafie; Michael B Petersen; Ming Qi; Rajkumar S Ramesar; Joel Zlotogora; Richard G H Cotton
Journal:  Hum Mutat       Date:  2011-01       Impact factor: 4.878

7.  FINDbase: a relational database recording frequencies of genetic defects leading to inherited disorders worldwide.

Authors:  Sjozef van Baal; Polynikis Kaimakis; Manyphong Phommarinh; Daphne Koumbi; Harry Cuppens; Francesca Riccardino; Milan Macek; Charles R Scriver; George P Patrinos
Journal:  Nucleic Acids Res       Date:  2006-11-28       Impact factor: 16.971

8.  Expanded national database collection and data coverage in the FINDbase worldwide database for clinically relevant genomic variation allele frequencies.

Authors:  Emmanouil Viennas; Angeliki Komianou; Clint Mizzi; Maja Stojiljkovic; Christina Mitropoulou; Juha Muilu; Mauno Vihinen; Panagiota Grypioti; Styliani Papadaki; Cristiana Pavlidis; Branka Zukic; Theodora Katsila; Peter J van der Spek; Sonja Pavlovic; Giannis Tzimas; George P Patrinos
Journal:  Nucleic Acids Res       Date:  2016-10-18       Impact factor: 16.971

9.  Developments in FINDbase worldwide database for clinically relevant genomic variation allele frequencies.

Authors:  Petros Papadopoulos; Emmanouil Viennas; Vassiliki Gkantouna; Cristiana Pavlidis; Marina Bartsakoulia; Zafeiria-Marina Ioannou; Ilham Ratbi; Abdelaziz Sefiani; John Tsaknakis; Konstantinos Poulas; Giannis Tzimas; George P Patrinos
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

10.  Dispelling myths about rare disease registry system development.

Authors:  Matthew Bellgard; Christophe Beroud; Kay Parkinson; Tess Harris; Segolene Ayme; Gareth Baynam; Tarun Weeramanthri; Hugh Dawkins; Adam Hunter
Journal:  Source Code Biol Med       Date:  2013-10-16
  10 in total

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