Literature DB >> 16864592

arrayQCplot: software for checking the quality of microarray data.

Eun-Kyung Lee1, Sung-Gon Yi, Taesung Park.   

Abstract

UNLABELLED: arrayQCplot is a software for the exploratory analysis of microarray data. This software focuses on quality control and generates newly developed plots for quality and reproducibility checks. It is developed using R and provides a user-friendly graphical interface for graphics and statistical analysis. Therefore, novice users will find arrayQCplot as an easy-to-use software for checking the quality of their data by a simple mouse click. AVAILABILITY: arrayQCplot software is available from Bioconductor at http://www.bioconductor.org. A more detailed manual is available at http://bibs.snu.ac.kr/software/arrayQCplot CONTACT: tspark@stats.snu.ac.kr.

Entities:  

Mesh：

Year:  2006        PMID： 16864592     DOI： 10.1093/bioinformatics/btl367

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  Quality assessment of microarray data in a multicenter study.

Authors:  Kellie J Archer; Valeria R Mas; Thomas R O'Brien; Ruth Pfeiffer; Nicole L Lum; Robert A Fisher
Journal:  Diagn Mol Pathol       Date:  2009-03

2.  Improved quality control processing of peptide-centric LC-MS proteomics data.

Authors:  Melissa M Matzke; Katrina M Waters; Thomas O Metz; Jon M Jacobs; Amy C Sims; Ralph S Baric; Joel G Pounds; Bobbie-Jo M Webb-Robertson
Journal:  Bioinformatics       Date:  2011-08-18       Impact factor: 6.937

3.  arrayQualityMetrics--a bioconductor package for quality assessment of microarray data.

Authors:  Audrey Kauffmann; Robert Gentleman; Wolfgang Huber
Journal:  Bioinformatics       Date:  2008-12-23       Impact factor: 6.937

4.  Unsupervised assessment of microarray data quality using a Gaussian mixture model.

Authors:  Brian E Howard; Beate Sick; Steffen Heber
Journal:  BMC Bioinformatics       Date:  2009-06-22       Impact factor: 3.169

5.  Differences in X-chromosome transcriptional activity and cholesterol metabolism between placentae from swine breeds from Asian and Western origins.

Authors:  Steve R Bischoff; Shengdar Q Tsai; Nicholas E Hardison; Alison A Motsinger-Reif; Bradley A Freking; Dan J Nonneman; Gary A Rohrer; Jorge A Piedrahita
Journal:  PLoS One       Date:  2013-01-31       Impact factor: 3.240

6.  Exploratory methods for checking quality of microarray data.

Authors:  Eun-Kyung Lee; Taesung Park
Journal:  Bioinformation       Date:  2007-04-10

7.  CANcer-specific Evaluation System (CANES): a high-accuracy platform, for preclinical single/multi-biomarker discovery.

Authors:  Min-Seok Kwon; Seungyoon Nam; Sungyoung Lee; Young Zoo Ahn; Hae Ryung Chang; Yon Hui Kim; Taesung Park
Journal:  Oncotarget       Date:  2017-07-15
  7 in total

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