Literature DB >> 16863331

Depletion-induced instability in protein-DNA mixtures: Influence of protein charge and size.

Renko de Vries1.   

Abstract

While there is abundant experimental and theoretical work on polymer-induced DNA condensation, it is still unclear whether globular proteins can condense linear DNA or not. We develop a simple analytical approximation for the depletion attraction between rodlike segments of semiflexible polyelectrolytes such as DNA, induced by nonbinding globular proteins. Monte Carlo simulations show that the approximation works well up to protein volume fractions of at least 20%. From the expression for the depletion attraction we estimate instability thresholds by computing the effective virial coefficient of DNA segments in protein solutions. While globular proteins are found to be much poorer depletion agents than flexible polymers, it should be possible to condense linear DNA with small highly charged globular proteins, at relatively low ionic strengths.

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Year:  2006        PMID: 16863331     DOI: 10.1063/1.2209683

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Macromolecular crowding induced elongation and compaction of single DNA molecules confined in a nanochannel.

Authors:  Ce Zhang; Pei Ge Shao; Jeroen A van Kan; Johan R C van der Maarel
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-16       Impact factor: 11.205

2.  Bacterial Nucleoid: Interplay of DNA Demixing and Supercoiling.

Authors:  Marc Joyeux
Journal:  Biophys J       Date:  2019-09-26       Impact factor: 4.033

3.  Crowding Induces Entropically-Driven Changes to DNA Dynamics That Depend on Crowder Structure and Ionic Conditions.

Authors:  Warren M Mardoum; Stephanie M Gorczyca; Kathryn E Regan; Tsai-Chin Wu; Rae M Robertson-Anderson
Journal:  Front Phys       Date:  2018-06-05
  3 in total

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