Literature DB >> 16862122

DNA overwinds when stretched.

Jeff Gore1, Zev Bryant, Marcelo Nöllmann, Mai U Le, Nicholas R Cozzarelli, Carlos Bustamante.   

Abstract

DNA is often modelled as an isotropic rod, but its chiral structure suggests the possible importance of anisotropic mechanical properties, including coupling between twisting and stretching degrees of freedom. Simple physical intuition predicts that DNA should unwind under tension, as it is pulled towards a denatured structure. We used rotor bead tracking to directly measure twist-stretch coupling in single DNA molecules. Here we show that for small distortions, contrary to intuition, DNA overwinds under tension, reaching a maximum twist at a tension of approximately 30 pN. As tension is increased above this critical value, the DNA begins to unwind. The observed twist-stretch coupling predicts that DNA should also lengthen when overwound under constant tension, an effect that we quantitatively confirm. We present a simple model that explains these unusual mechanical properties, and also suggests a possible origin for the anomalously large torsional rigidity of DNA. Our results have implications for the action of DNA-binding proteins that must stretch and twist DNA to compensate for variability in the lengths of their binding sites. The requisite coupled DNA distortions are favoured by the intrinsic mechanical properties of the double helix reported here.

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Year:  2006        PMID: 16862122     DOI: 10.1038/nature04974

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  82 in total

1.  Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

Authors:  Florian C Oberstrass; Louis E Fernandes; Zev Bryant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

2.  Functional specificity of a protein-DNA complex mediated by two arginines bound to the minor groove.

Authors:  Jesús Mendieta; Laura Pérez-Lago; Margarita Salas; Ana Camacho
Journal:  J Bacteriol       Date:  2012-06-29       Impact factor: 3.490

3.  Energetics at the DNA supercoiling transition.

Authors:  Hergen Brutzer; Nicholas Luzzietti; Daniel Klaue; Ralf Seidel
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

4.  How stiff is DNA?

Authors:  Guohui Zheng; Luke Czapla; A R Srinivasan; Wilma K Olson
Journal:  Phys Chem Chem Phys       Date:  2009-12-23       Impact factor: 3.676

5.  Light-driven nanoscale plasmonic motors.

Authors:  Ming Liu; Thomas Zentgraf; Yongmin Liu; Guy Bartal; Xiang Zhang
Journal:  Nat Nanotechnol       Date:  2010-07-04       Impact factor: 39.213

6.  Physical origin of DNA unzipping.

Authors:  Sitichoke Amnuanpol
Journal:  J Biol Phys       Date:  2015-08-26       Impact factor: 1.365

7.  Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.

Authors:  Jan Lipfert; Gary M Skinner; Johannes M Keegstra; Toivo Hensgens; Tessa Jager; David Dulin; Mariana Köber; Zhongbo Yu; Serge P Donkers; Fang-Chieh Chou; Rhiju Das; Nynke H Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

8.  Sequence-dependent twist-stretch coupling in DNA.

Authors:  Timothée Lionnet; Filip Lankas
Journal:  Biophys J       Date:  2006-12-01       Impact factor: 4.033

9.  On structural transitions, thermodynamic equilibrium, and the phase diagram of DNA and RNA duplexes under torque and tension.

Authors:  Jeff Wereszczynski; Ioan Andricioaei
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

Review 10.  High-resolution, single-molecule measurements of biomolecular motion.

Authors:  William J Greenleaf; Michael T Woodside; Steven M Block
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007
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