Literature DB >> 16861205

Taxonomic indexing--extending the role of taxonomy.

David J Patterson1, David Remsen, William A Marino, Cathy Norton.   

Abstract

Taxonomic indexing refers to a new array of taxonomically intelligent network services that use nomenclatural principles and elements of expert taxonomic knowledge to manage information about organisms. Taxonomic indexing was introduced to help manage the increasing amounts of digital information about biology. It has been designed to form a near basal layer in a layered cyberinfrastructure that deals with biological information. Taxonomic Indexing accommodates the special problems of using names of organisms to index biological material. It links alternative names for the same entity (reconciliation), and distinguishes between uses of the same name for different entities (disambiguation), and names are placed within an indefinite number of hierarchical schemes. In order to access all information on all organisms, Taxonomic indexing must be able to call on a registry of all names in all forms for all organisms. NameBank has been developed to meet that need. Taxonomic indexing is an area of informatics that overlaps with taxonomy, is dependent on the expert input of taxonomists, and reveals the relevance of the discipline to a wide audience.

Mesh:

Year:  2006        PMID: 16861205     DOI: 10.1080/10635150500541680

Source DB:  PubMed          Journal:  Syst Biol        ISSN: 1063-5157            Impact factor:   15.683


  7 in total

1.  LINNAEUS: a species name identification system for biomedical literature.

Authors:  Martin Gerner; Goran Nenadic; Casey M Bergman
Journal:  BMC Bioinformatics       Date:  2010-02-11       Impact factor: 3.169

2.  NetiNeti: discovery of scientific names from text using machine learning methods.

Authors:  Lakshmi Manohar Akella; Catherine N Norton; Holly Miller
Journal:  BMC Bioinformatics       Date:  2012-08-22       Impact factor: 3.169

3.  Identifying and relating biological concepts in the Catalogue of Life.

Authors:  Andrew C Jones; Richard J White; Ewen R Orme
Journal:  J Biomed Semantics       Date:  2011-10-17

4.  The use and limits of scientific names in biological informatics.

Authors:  David Remsen
Journal:  Zookeys       Date:  2016-01-07       Impact factor: 1.546

5.  TBMap: a taxonomic perspective on the phylogenetic database TreeBASE.

Authors:  Roderic D M Page
Journal:  BMC Bioinformatics       Date:  2007-05-18       Impact factor: 3.169

6.  Nomenclatural benchmarking: the roles of digital typification and telemicroscopy.

Authors:  Quentin Wheeler; Thierry Bourgoin; Jonathan Coddington; Timothy Gostony; Andrew Hamilton; Roy Larimer; Andrew Polaszek; Michael Schauff; M Alma Solis
Journal:  Zookeys       Date:  2012-07-20       Impact factor: 1.546

7.  Exploring historical trends using taxonomic name metadata.

Authors:  Indra Neil Sarkar; Ryan Schenk; Catherine N Norton
Journal:  BMC Evol Biol       Date:  2008-05-13       Impact factor: 3.260

  7 in total

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