Literature DB >> 16855311

Structural basis for non-catalytic and catalytic activities of ribonuclease III.

Xinhua Ji1.   

Abstract

Ribonuclease III (RNase III) represents a highly conserved family of double-stranded (ds) RNA-specific endoribonucleases, exemplified by bacterial RNase III and eukaryotic Rnt1p, Drosha and Dicer. Bacterial RNase III, containing an endonuclease domain followed by a dsRNA-binding domain, is the most extensively studied member of the family. It can affect RNA structure and gene expression in either of two ways: as a processing enzyme that cleaves dsRNA or as a binding protein that binds but does not cleave dsRNA. The available biochemical and structural data support the existence of two distinct forms of the RNase III-dsRNA complex which reflect the dual activities of the protein. The information revealed by the structures of bacterial RNase III provides insight into the mechanism of dsRNA processing by all members of the family.

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Year:  2006        PMID: 16855311     DOI: 10.1107/S090744490601153X

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  11 in total

1.  RNA-Seq and RNA immunoprecipitation analyses of the transcriptome of Streptomyces coelicolor identify substrates for RNase III.

Authors:  Marcha L Gatewood; Patricia Bralley; M Ryan Weil; George H Jones
Journal:  J Bacteriol       Date:  2012-03-02       Impact factor: 3.490

2.  Structure of a yeast RNase III dsRBD complex with a noncanonical RNA substrate provides new insights into binding specificity of dsRBDs.

Authors:  Zhonghua Wang; Elon Hartman; Kevin Roy; Guillaume Chanfreau; Juli Feigon
Journal:  Structure       Date:  2011-07-13       Impact factor: 5.006

3.  RNase III is required for actinomycin production in Streptomyces antibioticus.

Authors:  Jung-Hoon Lee; Marcha L Gatewood; George H Jones
Journal:  Appl Environ Microbiol       Date:  2013-08-16       Impact factor: 4.792

4.  Intrinsic dynamics of an extended hydrophobic core in the S. cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites.

Authors:  Elon Hartman; Zhonghua Wang; Qi Zhang; Kevin Roy; Guillaume Chanfreau; Juli Feigon
Journal:  J Mol Biol       Date:  2012-11-28       Impact factor: 5.469

5.  In vitro binding of single-stranded RNA by human Dicer.

Authors:  Hemant K Kini; S Patrick Walton
Journal:  FEBS Lett       Date:  2007-11-20       Impact factor: 4.124

6.  Reporter mRNAs cleaved by Rnt1p are exported and degraded in the cytoplasm.

Authors:  Stacie Meaux; Mathieu Lavoie; Jules Gagnon; Sherif Abou Elela; Ambro van Hoof
Journal:  Nucleic Acids Res       Date:  2011-08-05       Impact factor: 16.971

7.  Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB.

Authors:  Samridhdi Paudyal; Mercedes Alfonso-Prieto; Vincenzo Carnevale; Shiv K Redhu; Michael L Klein; Allen W Nicholson
Journal:  Proteins       Date:  2015-01-21

Review 8.  Ribonuclease III mechanisms of double-stranded RNA cleavage.

Authors:  Allen W Nicholson
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-09-30       Impact factor: 9.957

9.  A role for the Dicer helicase domain in the processing of thermodynamically unstable hairpin RNAs.

Authors:  Harris S Soifer; Masayuki Sano; Kumi Sakurai; Pritsana Chomchan; Pål Saetrom; Mark A Sherman; Michael A Collingwood; Mark A Behlke; John J Rossi
Journal:  Nucleic Acids Res       Date:  2008-10-15       Impact factor: 16.971

10.  Phylogenetic analysis of the endoribonuclease Dicer family.

Authors:  Zeqian Gao; Miao Wang; David Blair; Yadong Zheng; Yongxi Dou
Journal:  PLoS One       Date:  2014-04-18       Impact factor: 3.240

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