Literature DB >> 16855305

From phasing to structure refinement in-house: Cr/Cu dual-wavelength system and a loopless free crystal-mounting method.

Nobuhisa Watanabe1.   

Abstract

The practical applicability of in-house structure determination using Cr K alpha X-rays (2.29 A) and a loopless free crystal-mounting method was examined using five novel proteins. Proteins from 9.6 to 84 kDa have been solved using this method without any derivatization. In all cases, more than 90% of structures were constructed automatically with side chains by use of the Cr SAD method. The free crystal-mounting technique increases the accuracy of the anomalous differences between Bijvoet mates and makes the in-house single-wavelength SAD method with a Cr K alpha X-ray source a very useful tool for high-throughput structure determination. In addition, a Cr/Cu dual-wavelength system makes it possible to perform structure analysis from phasing to refinement of the structure in-house.

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Year:  2006        PMID: 16855305     DOI: 10.1107/S0907444906010432

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  6 in total

1.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

Review 2.  Native SAD is maturing.

Authors:  John P Rose; Bi-Cheng Wang; Manfred S Weiss
Journal:  IUCrJ       Date:  2015-05-14       Impact factor: 4.769

3.  Humidity control and hydrophilic glue coating applied to mounted protein crystals improves X-ray diffraction experiments.

Authors:  Seiki Baba; Takeshi Hoshino; Len Ito; Takashi Kumasaka
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-08-17

4.  Solving a new R2lox protein structure by microcrystal electron diffraction.

Authors:  Hongyi Xu; Hugo Lebrette; Max T B Clabbers; Jingjing Zhao; Julia J Griese; Xiaodong Zou; Martin Högbom
Journal:  Sci Adv       Date:  2019-08-07       Impact factor: 14.136

5.  A technique for high-throughput protein crystallization in ionically cross-linked polysaccharide gel beads for X-ray diffraction experiments.

Authors:  Michihiro Sugahara
Journal:  PLoS One       Date:  2014-04-16       Impact factor: 3.240

6.  A crystal-processing machine using a deep-ultraviolet laser: application to long-wavelength native SAD experiments.

Authors:  Yoshiaki Kawano; Masahide Hikita; Naohiro Matsugaki; Masaki Yamamoto; Toshiya Senda
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-01-27       Impact factor: 1.056

  6 in total

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