Literature DB >> 16852911

Implicit solvent simulations of DPC micelle formation.

Themis Lazaridis1, Buddhadeb Mallik, Yong Chen.   

Abstract

The formation of micelles by dodecylphosphocholine (DPC) is modeled by treating the surfactants in atomic detail and the solvent implicitly, in the spirit of the EEF1 solvation model for proteins. The solvation parameters of the DPC atoms are carried over from those of similar atoms in proteins. A slight adjustment of the parameters for the headgroup was found necessary for obtaining an aggregation number consistent with experiment. Molecular dynamics simulations of 960 DPC molecules at different concentrations are used to obtain the aggregation number, the micelle size distribution, and the CMC. At 20 mM concentration we obtain an aggregation number of 53-56 and a CMC of 1.25 mM, values close to the experimental ones. At 100 mM the aggregation number increases to 90. Simulations of individual micelles of varying size show that the effective energy per surfactant molecule is initially a decreasing function of aggregation number but stabilizes at about 60 molecules. The van der Waals term and the desolvation of nonpolar groups contribute to micellization, whereas the desolvation of polar groups opposes it. From the difference between the effective energy and the free energy (calculated from the CMC), the translational and rotational entropy contributions to the free energy are estimated at about 7 kcal/mol per monomer. The micelles obtained here are more irregular than those obtained in explicit water simulations. This modeling approach allows the study of larger surfactant aggregates for longer times and the extraction of thermodynamic in addition to structural information.

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Year:  2005        PMID: 16852911     DOI: 10.1021/jp0516801

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  27 in total

1.  Interactions between the conserved hydrophobic region of the prion protein and dodecylphosphocholine micelles.

Authors:  Simon Sauvé; Daniel Buijs; Geneviève Gingras; Yves Aubin
Journal:  J Biol Chem       Date:  2011-11-29       Impact factor: 5.157

2.  Investigation of Chiral Molecular Micelles by NMR Spectroscopy and Molecular Dynamics Simulation.

Authors:  Kevin F Morris; Eugene J Billiot; Fereshteh H Billiot; Kenny B Lipkowitz; William M Southerland; Yayin Fang
Journal:  Open J Phys Chem       Date:  2012-11-01

3.  Anisotropic solvent model of the lipid bilayer. 1. Parameterization of long-range electrostatics and first solvation shell effects.

Authors:  Andrei L Lomize; Irina D Pogozheva; Henry I Mosberg
Journal:  J Chem Inf Model       Date:  2011-03-25       Impact factor: 4.956

4.  Modeling Protein-Micelle Systems in Implicit Water.

Authors:  Rodney E Versace; Themis Lazaridis
Journal:  J Phys Chem B       Date:  2015-06-15       Impact factor: 2.991

5.  Target of rapamycin FATC domain as a general membrane anchor: The FKBP-12 like domain of FKBP38 as a case study.

Authors:  Maristella De Cicco; Lech-G Milroy; Sonja A Dames
Journal:  Protein Sci       Date:  2017-10-30       Impact factor: 6.725

6.  Improving metabolic stability by glycosylation: bifunctional peptide derivatives that are opioid receptor agonists and neurokinin 1 receptor antagonists.

Authors:  Takashi Yamamoto; Padma Nair; Neil E Jacobsen; Josef Vagner; Vinod Kulkarni; Peg Davis; Shou-Wu Ma; Edita Navratilova; Henry I Yamamura; Todd W Vanderah; Frank Porreca; Josephine Lai; Victor J Hruby
Journal:  J Med Chem       Date:  2009-08-27       Impact factor: 7.446

7.  The importance of micelle-bound states for the bioactivities of bifunctional peptide derivatives for delta/mu opioid receptor agonists and neurokinin 1 receptor antagonists.

Authors:  Takashi Yamamoto; Padma Nair; Neil E Jacobsen; Peg Davis; Shou-wu Ma; Edita Navratilova; Sharif Moye; Josephine Lai; Henry I Yamamura; Todd W Vanderah; Frank Porreca; Victor J Hruby
Journal:  J Med Chem       Date:  2008-09-27       Impact factor: 7.446

8.  Aggregation behavior of ibuprofen, cholic acid and dodecylphosphocholine micelles.

Authors:  Priyanka Prakash; Abdallah Sayyed-Ahmad; Yong Zhou; David E Volk; David G Gorenstein; Elizabeth Dial; Lenard M Lichtenberger; Alemayehu A Gorfe
Journal:  Biochim Biophys Acta       Date:  2012-08-04

9.  NMR- and circular dichroism-monitored lipid binding studies suggest a general role for the FATC domain as membrane anchor of phosphatidylinositol 3-kinase-related kinases (PIKK).

Authors:  Lisa A M Sommer; Martin Schaad; Sonja A Dames
Journal:  J Biol Chem       Date:  2013-05-13       Impact factor: 5.157

10.  Effective critical micellar concentration of a zwitterionic detergent: a fluorimetric study on n-dodecyl phosphocholine.

Authors:  Pasquale Palladino; Filomena Rossi; Raffaele Ragone
Journal:  J Fluoresc       Date:  2009-09-16       Impact factor: 2.217

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