Literature DB >> 16852787

Car-Parrinello molecular dynamics simulation of Fe 3+ (aq).

Sami Amira1, Daniel Spångberg, Viktor Zelin, Michael Probst, Kersti Hermansson.   

Abstract

The optimized geometry and energetic properties of Fe(D2O)n 3+ clusters, with n = 4 and 6, have been studied with density-functional theory calculations and the BLYP functional, and the hydration of a single Fe 3+ ion in a periodic box with 32 water molecules at room temperature has been studied with Car-Parrinello molecular dynamics and the same functional. We have compared the results from the CPMD simulation with classical MD simulations, using a flexible SPC-based water model and the same number of water molecules, to evaluate the relative strengths and weaknesses of the two MD methods. The classical MD simulations and the CPMD simulations both give Fe-water distances in good agreement with experiment, but for the intramolecular vibrations, the classical MD yields considerably better absolute frequencies and ion-induced frequency shifts. On the other hand, the CPMD method performs considerably better than the classical MD in describing the intramolecular geometry of the water molecule in the first hydration shell and the average first shell...second shell hydrogen-bond distance. Differences between the two methods are also found with respect to the second-shell water orientations. The effect of the small box size (32 vs 512 water molecules) was evaluated by comparing results from classical simulations using different box sizes; non-negligible effects are found for the ion-water distance and the tilt angles of the water molecules in the second hydration shell and for the O-D stretching vibrational frequencies of the water molecules in the first hydration shell.

Entities:  

Year:  2005        PMID: 16852787     DOI: 10.1021/jp050186u

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  2 in total

1.  BuRNN: Buffer Region Neural Network Approach for Polarizable-Embedding Neural Network/Molecular Mechanics Simulations.

Authors:  Bettina Lier; Peter Poliak; Philipp Marquetand; Julia Westermayr; Chris Oostenbrink
Journal:  J Phys Chem Lett       Date:  2022-04-25       Impact factor: 6.888

2.  Influence on ferric chloride aqueous solution caused by external electrostatic field: a molecular dynamics simulation study.

Authors:  Shi Zhibo; Li Liyi; Han Yong; Bai Jie
Journal:  RSC Adv       Date:  2018-11-16       Impact factor: 4.036

  2 in total

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