Literature DB >> 16852266

Femtosecond stimulated Raman study of excited-state evolution in bacteriorhodopsin.

David W McCamant1, Philipp Kukura, Richard A Mathies.   

Abstract

Femtosecond time-resolved stimulated Raman spectroscopy (FSRS) is used to examine the photoisomerization dynamics in the excited state of bacteriorhodopsin. Near-IR stimulated emission is observed in the FSRS probe window that decays with a 400-600-fs time constant. Additionally, dispersive vibrational lines appear at the locations of the ground-state vibrational frequencies and decay with a 260-fs time constant. The dispersive line shapes are caused by a nonlinear effect we term Raman initiated by nonlinear emission (RINE) that generates vibrational coherence on the ground-state surface. Theoretical expressions for the RINE line shapes are developed and used to fit the spectral and temporal evolution of the spectra. The rapid 260-fs decay of the RINE peak intensity, compared to the slower evolution of the stimulated emission, indicates that the excited-state population moves in approximately 260 fs to a region on the potential energy surface where the RINE signal is attenuated. This loss of RINE signal is best explained by structural evolution of the excited-state population along multiple low-frequency modes that carry the molecule out of the harmonic photochemically inactive Franck-Condon region and into the photochemically active geometry.

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Year:  2005        PMID: 16852266      PMCID: PMC1544036          DOI: 10.1021/jp050095x

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  24 in total

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Authors:  Philipp Kukura; David W McCamant; Richard A Mathies
Journal:  J Phys Chem A       Date:  2004-07-15       Impact factor: 2.781

2.  Femtosecond infrared spectroscopy of bacteriorhodopsin chromophore isomerization.

Authors:  Johannes Herbst; Karsten Heyne; Rolf Diller
Journal:  Science       Date:  2002-08-02       Impact factor: 47.728

3.  Theory of femtosecond stimulated Raman spectroscopy.

Authors:  Soo-Y Lee; Donghui Zhang; David W McCamant; Philipp Kukura; Richard A Mathies
Journal:  J Chem Phys       Date:  2004-08-22       Impact factor: 3.488

4.  Quantum efficiencies of bacteriorhodopsin photochemical reactions.

Authors:  A H Xie
Journal:  Biophys J       Date:  1990-11       Impact factor: 4.033

Review 5.  Chemical dynamics in proteins: the photoisomerization of retinal in bacteriorhodopsin.

Authors:  F Gai; K C Hasson; J C McDonald; P A Anfinrud
Journal:  Science       Date:  1998-03-20       Impact factor: 47.728

6.  The photoisomerization of retinal in bacteriorhodospin: experimental evidence for a three-state model.

Authors:  K C Hasson; F Gai; P A Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-24       Impact factor: 11.205

7.  Resonance Raman spectra of bacteriorhodopsin's primary photoproduct: evidence for a distorted 13-cis retinal chromophore.

Authors:  M Braiman; R Mathies
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

Review 8.  Understanding structure and function in the light-driven proton pump bacteriorhodopsin.

Authors:  J K Lanyi
Journal:  J Struct Biol       Date:  1998-12-15       Impact factor: 2.867

9.  Effect of protonation on the isomerization properties of n-butylamine Schiff base of isomeric retinal as revealed by direct HPLC analyses: selection of isomerization pathways by retinal proteins.

Authors:  Y Koyama; K Kubo; M Komori; H Yasuda; Y Mukai
Journal:  Photochem Photobiol       Date:  1991-09       Impact factor: 3.421

10.  Resonance Raman evidence for an all-trans to 13-cis isomerization in the proton-pumping cycle of bacteriorhodopsin.

Authors:  M Braiman; R Mathies
Journal:  Biochemistry       Date:  1980-11-11       Impact factor: 3.162

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  13 in total

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2.  Terahertz spectroscopy of bacteriorhodopsin and rhodopsin: similarities and differences.

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3.  Photochemical reaction dynamics of the primary event of vision studied by means of a hybrid molecular simulation.

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Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

4.  Excitation energy-transfer and the relative orientation of retinal and carotenoid in xanthorhodopsin.

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5.  Mapping GFP structure evolution during proton transfer with femtosecond Raman spectroscopy.

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Journal:  Nature       Date:  2009-11-12       Impact factor: 49.962

6.  Vibrational motions associated with primary processes in bacteriorhodopsin studied by coherent infrared emission spectroscopy.

Authors:  Géza I Groma; Anne Colonna; Jean-Louis Martin; Marten H Vos
Journal:  Biophys J       Date:  2011-03-16       Impact factor: 4.033

7.  Carotenoid response to retinal excitation and photoisomerization dynamics in xanthorhodopsin.

Authors:  Václav Slouf; Sergei P Balashov; Janos K Lanyi; Tõnu Pullerits; Tomáš Polívka
Journal:  Chem Phys Lett       Date:  2011-11-07       Impact factor: 2.328

8.  Insights into excited-state and isomerization dynamics of bacteriorhodopsin from ultrafast transient UV absorption.

Authors:  S Schenkl; F van Mourik; N Friedman; M Sheves; R Schlesinger; S Haacke; M Chergui
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-06       Impact factor: 11.205

9.  Femtosecond carotenoid to retinal energy transfer in xanthorhodopsin.

Authors:  Tomás Polívka; Sergei P Balashov; Pavel Chábera; Eleonora S Imasheva; Arkady Yartsev; Villy Sundström; Janos K Lanyi
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

10.  Driving Protein Conformational Changes with Light: Photoinduced Structural Rearrangement in a Heterobimetallic Oxidase.

Authors:  Pearson T Maugeri; Julia J Griese; Rui M Branca; Effie K Miller; Zachary R Smith; Jürgen Eirich; Martin Högbom; Hannah S Shafaat
Journal:  J Am Chem Soc       Date:  2018-01-22       Impact factor: 15.419

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