Literature DB >> 16847562

The assessment of DNA from marine organisms via a modified salting-out protocol.

Giovanni Battista Ferrara1, Barbara Murgia, Anna Maria Parodi, Laura Valisano, Carlo Cerrano, Giulio Palmisano, Giorgio Bavestrello, Michele Sara.   

Abstract

We developed a rapid, practical and non-toxic salting-out method for the extraction of DNA from marine organisms, and tested it on two representative species of Porifera and Cnidaria, both living in association with symbiotic zooxanthellae. We tested the efficiency of the protocol by comparing the output of the method for fresh tissue, frozen tissue and tissue stored in ethanol. It proved to be effective for extracting DNA in the case of the methods of preservation considered here, and for obtaining quantities of DNA comparable to those obtained via the traditional approach. The DNA from both species was of good quality. The DNA obtained was amplified by PCR using specific primers for the large ribosomal subunit, allowing the identification of the presence of both the host and symbiont genomes.

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Year:  2006        PMID: 16847562      PMCID: PMC6275604          DOI: 10.2478/s11658-006-0013-7

Source DB:  PubMed          Journal:  Cell Mol Biol Lett        ISSN: 1425-8153            Impact factor:   5.787


  12 in total

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2.  Variables influencing extraction of nucleic acids from microbial plankton (viruses, bacteria, and protists) collected on nanoporous aluminum oxide filters.

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3.  Intra-Colonial Functional Differentiation-Related Modulation of the Cellular Membrane in a Pocilloporid Coral Seriatopora caliendrum.

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Journal:  Mar Biotechnol (NY)       Date:  2015-08-05       Impact factor: 3.619

4.  Can resistant coral-Symbiodinium associations enable coral communities to survive climate change? A study of a site exposed to long-term hot water input.

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Journal:  PeerJ       Date:  2014-04-08       Impact factor: 2.984

5.  Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan, in the South China Sea.

Authors:  Shashank Keshavmurthy; Kuo-Hsun Tang; Chia-Min Hsu; Chai-Hsia Gan; Chao-Yang Kuo; Keryea Soong; Hong-Nong Chou; Chaolun Allen Chen
Journal:  PeerJ       Date:  2017-01-18       Impact factor: 2.984

6.  Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools.

Authors:  Joana Rocha; Francisco J R C Coelho; Luísa Peixe; Newton C M Gomes; Ricardo Calado
Journal:  Sci Rep       Date:  2014-11-11       Impact factor: 4.379

7.  Temporal variation and photochemical efficiency of species in Symbiodinaceae associated with coral Leptoria phrygia (Scleractinia; Merulinidae) exposed to contrasting temperature regimes.

Authors:  Rodrigo Carballo-Bolaños; Vianney Denis; Ya-Yi Huang; Shashank Keshavmurthy; Chaolun Allen Chen
Journal:  PLoS One       Date:  2019-06-28       Impact factor: 3.240

8.  Molecular evidence shows low species diversity of coral-associated hydroids in Acropora corals.

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9.  Effect of Fe nanoparticle on growth and glycolipid biosurfactant production under solid state culture by marine Nocardiopsis sp. MSA13A.

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Journal:  BMC Biotechnol       Date:  2014-05-21       Impact factor: 2.563

10.  A modified method for genomic DNA extraction from the fish intestinal microflora.

Authors:  Zhuoran Han; Jingfeng Sun; Aijun Lv; YeongYik Sung; Xueliang Sun; Hongyue Shi; Xiucai Hu; Anli Wang; Kezhi Xing
Journal:  AMB Express       Date:  2018-04-02       Impact factor: 3.298

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