Literature DB >> 16841067

Open software for biologists: from famine to feast.

Dawn Field1, Bela Tiwari, Tim Booth, Stewart Houten, Dan Swan, Nicolas Bertrand, Milo Thurston.   

Abstract

Developing and deploying specialized computing systems for specific research communities is achievable, cost effective and has wide-ranging benefits.

Mesh：

Year:  2006        PMID： 16841067     DOI： 10.1038/nbt0706-801

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


  82 in total

1.  Long-term nickel exposure altered the bacterial community composition but not diversity in two contrasting agricultural soils.

Authors:  Jing Li; Hang-Wei Hu; Yi-Bing Ma; Jun-Tao Wang; Yu-Rong Liu; Ji-Zheng He
Journal:  Environ Sci Pollut Res Int       Date:  2015-03-03       Impact factor: 4.223

2.  Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline.

Authors:  John Christian Gaby; Lavanya Rishishwar; Lina C Valderrama-Aguirre; Stefan J Green; Augusto Valderrama-Aguirre; I King Jordan; Joel E Kostka
Journal:  Appl Environ Microbiol       Date:  2018-01-31       Impact factor: 4.792

3.  Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy.

Authors:  Enis Afgan; Brad Chapman; Margita Jadan; Vedran Franke; James Taylor
Journal:  Curr Protoc Bioinformatics       Date:  2012-06

4.  Copper Pollution Increases the Resistance of Soil Archaeal Community to Changes in Water Regime.

Authors:  Jing Li; Yu-Rong Liu; Li-Juan Cui; Hang-Wei Hu; Jun-Tao Wang; Ji-Zheng He
Journal:  Microb Ecol       Date:  2017-05-10       Impact factor: 4.552

5.  Expression of pluripotency factors in echinoderm regeneration.

Authors:  Vladimir S Mashanov; Olga R Zueva; José E García-Arrarás
Journal:  Cell Tissue Res       Date:  2014-12-03       Impact factor: 5.249

6.  Software platform virtualization in chemistry research and university teaching.

Authors:  Tobias Kind; Tim Leamy; Julie A Leary; Oliver Fiehn
Journal:  J Cheminform       Date:  2009-11-16       Impact factor: 5.514

7.  The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation.

Authors:  Jack A Gilbert; Dawn Field; Paul Swift; Simon Thomas; Denise Cummings; Ben Temperton; Karen Weynberg; Susan Huse; Margaret Hughes; Ian Joint; Paul J Somerfield; Martin Mühling
Journal:  PLoS One       Date:  2010-11-29       Impact factor: 3.240

Review 8.  Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in α- and β-heterochromatin, satellite DNA emergence, and piRNA expression.

Authors:  Guilherme B Dias; Pedro Heringer; Marta Svartman; Gustavo C S Kuhn
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

9.  Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application.

Authors:  Gaye Lightbody; Valeriia Haberland; Fiona Browne; Laura Taggart; Huiru Zheng; Eileen Parkes; Jaine K Blayney
Journal:  Brief Bioinform       Date:  2019-09-27       Impact factor: 11.622

10.  Comparative multi-omics analysis reveals diverse latex-based defense strategies against pests among latex-producing organs of the fig tree (Ficus carica).

Authors:  Sakihito Kitajima; Wataru Aoki; Daisuke Shibata; Daisuke Nakajima; Nozomu Sakurai; Kazufumi Yazaki; Ryosuke Munakata; Toki Taira; Masaru Kobayashi; Shunsuke Aburaya; Eric Hyrmeya Savadogo; Susumu Hibino; Haruna Yano
Journal:  Planta       Date:  2018-03-13       Impact factor: 4.116
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