Literature DB >> 16839105

Estimates of the ab initio limit for sulfur-pi interactions: the H2S-benzene dimer.

Tony P Tauer1, M Elizabeth Derrick, C David Sherrill.   

Abstract

The interaction between aromatic rings and sulfur atoms in the side chains of amino acids is a factor in the formation and stabilization of alpha-helices in proteins. We studied the H(2)S-benzene dimer as the simplest possible prototype of sulfur-pi interactions. High-quality potential energy curves were obtained using coupled-cluster theory with single, double, and perturbative triple substitutions (CCSD(T)) and a large, augmented quadruple-zeta basis set (aug-cc-pVQZ). The equilibrium intermonomer distance for the hydrogens-down C(2)(v) configuration is 3.8 A with an interaction energy of -2.74 kcal mol(-1). Extrapolating the binding energy to the complete basis set limit gives -2.81 kcal mol(-1). This binding energy is comparable to that of H(2)O-benzene or of the benzene dimer, and the equilibrium distance is in close agreement with experiment. Other orientations of the dimer were also considered at less complete levels of theory. A considerable reduction in binding for the sulfur-down configuration, together with an energy decomposition analysis, indicates that the attraction in H(2)S-benzene is best thought of as arising from a favorable electrostatic interaction between partially positive hydrogens in H(2)S with the negatively charged pi-cloud of the benzene.

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Year:  2005        PMID: 16839105     DOI: 10.1021/jp046778e

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  10 in total

1.  A comparative electron correlation treatment in H(2)S-benzene dimer with DFT and wavefunction-based ab initio methods.

Authors:  Yixuan Wang; Beate Paulus
Journal:  Chem Phys Lett       Date:  2007-06-25       Impact factor: 2.328

2.  Insights into Thiol-Aromatic Interactions: A Stereoelectronic Basis for S-H/π Interactions.

Authors:  Christina R Forbes; Sudipta K Sinha; Himal K Ganguly; Shi Bai; Glenn P A Yap; Sandeep Patel; Neal J Zondlo
Journal:  J Am Chem Soc       Date:  2017-01-30       Impact factor: 15.419

3.  Energetic factors determining the binding of type I inhibitors to c-Met kinase: experimental studies and quantum mechanical calculations.

Authors:  Zhe Yu; Yu-chi Ma; Jing Ai; Dan-qi Chen; Dong-mei Zhao; Xin Wang; Yue-lei Chen; Mei-yu Geng; Bing Xiong; Mao-sheng Cheng; Jing-Kang Shen
Journal:  Acta Pharmacol Sin       Date:  2013-09-23       Impact factor: 6.150

4.  An ab initio study on tunability of σ-hole interactions in XHS:PH2Y and XH2P:SHY complexes (X = F, Cl, Br; Y = H, OH, OCH3, CH3, C2H5, and NH2).

Authors:  Mehdi D Esrafili; Nafiseh Mohammadirad
Journal:  J Mol Model       Date:  2015-06-21       Impact factor: 1.810

5.  Structural studies of a potent insect maturation inhibitor bound to the juvenile hormone esterase of Manduca sexta.

Authors:  Mark Wogulis; Craig E Wheelock; Shizuo G Kamita; Andrew C Hinton; Paul A Whetstone; Bruce D Hammock; David K Wilson
Journal:  Biochemistry       Date:  2006-04-04       Impact factor: 3.162

6.  Functionally important aromatic-aromatic and sulfur-π interactions in the D2 dopamine receptor.

Authors:  Kristina N-M Daeffler; Henry A Lester; Dennis A Dougherty
Journal:  J Am Chem Soc       Date:  2012-08-31       Impact factor: 15.419

7.  Models of S/pi interactions in protein structures: comparison of the H2S benzene complex with PDB data.

Authors:  Ashley L Ringer; Anastasia Senenko; C David Sherrill
Journal:  Protein Sci       Date:  2007-08-31       Impact factor: 6.725

8.  Selective inhibition of extracellular thioredoxin by asymmetric disulfides.

Authors:  Thomas R DiRaimondo; Nicholas M Plugis; Xi Jin; Chaitan Khosla
Journal:  J Med Chem       Date:  2013-01-31       Impact factor: 7.446

9.  Computational study on C-H...π interactions of acetylene with benzene, 1,3,5-trifluorobenzene and coronene.

Authors:  Tandabany C Dinadayalane; Guvanchmyrat Paytakov; Jerzy Leszczynski
Journal:  J Mol Model       Date:  2012-12-18       Impact factor: 1.810

10.  Dissecting C-H∙∙∙π and N-H∙∙∙π Interactions in Two Proteins Using a Combined Experimental and Computational Approach.

Authors:  Jia Wang; Lishan Yao
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

  10 in total

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