Literature DB >> 16839090

Collective solvent coordinates for the infrared spectrum of HOD in D2O based on an ab initio electrostatic map.

Tomoyuki Hayashi1, Thomas la Cour Jansen, Wei Zhuang, Shaul Mukamel.   

Abstract

An ab initio MP2 vibrational Hamiltonian of HOD in an external electrostatic potential parametrized by the electric field and its gradient-tensor is constructed. By combining it with the fluctuating electric field induced by the D(2)O solvent obtained from molecular dynamics simulations, we calculate the infrared absorption of the O-H stretch. The resulting solvent shift and infrared line shape for three force fields (TIP4P, SPC/E, and SW) are in good agreement with the experiment. A collective coordinate response for the solvent effect is constructed by identifying the main electrostatic field and gradient components contributing to the line shape. This allows a realistic stochastic Liouville equation simulation of the line shapes which is not restricted to Gaussian frequency fluctuations.

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Year:  2005        PMID: 16839090     DOI: 10.1021/jp046685x

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  21 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Two-dimensional infrared population transfer spectroscopy for enhancing structural markers of proteins.

Authors:  Thomas la Cour Jansen; Jasper Knoester
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

3.  Simulation protocols for coherent femtosecond vibrational spectra of peptides.

Authors:  Wei Zhuang; Darius Abramavicius; Tomoyuki Hayashi; Shaul Mukamel
Journal:  J Phys Chem B       Date:  2006-02-23       Impact factor: 2.991

Review 4.  Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.

Authors:  Darius Abramavicius; Benoit Palmieri; Dmitri V Voronine; Frantisek Sanda; Shaul Mukamel
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

5.  Nonlinear response of vibrational excitons: simulating the two-dimensional infrared spectrum of liquid water.

Authors:  A Paarmann; T Hayashi; S Mukamel; R J D Miller
Journal:  J Chem Phys       Date:  2009-05-28       Impact factor: 3.488

6.  The proton momentum distribution in strongly H-bonded phases of water: a critical test of electrostatic models.

Authors:  C J Burnham; T Hayashi; R L Napoleon; T Keyes; S Mukamel; G F Reiter
Journal:  J Chem Phys       Date:  2011-10-14       Impact factor: 3.488

7.  Probing intermolecular couplings in liquid water with two-dimensional infrared photon echo spectroscopy.

Authors:  A Paarmann; T Hayashi; S Mukamel; R J D Miller
Journal:  J Chem Phys       Date:  2008-05-21       Impact factor: 3.488

8.  Vibrational coherence and energy transfer in two-dimensional spectra with the optimized mean-trajectory approximation.

Authors:  Mallory Alemi; Roger F Loring
Journal:  J Chem Phys       Date:  2015-06-07       Impact factor: 3.488

9.  Hydrogen bonding and Raman, IR, and 2D-IR spectroscopy of dilute HOD in liquid D2O.

Authors:  B Auer; R Kumar; J R Schmidt; J L Skinner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-18       Impact factor: 11.205

10.  Sensitivity of 2D IR spectra to peptide helicity: a concerted experimental and simulation study of an octapeptide.

Authors:  Neelanjana Sengupta; Hiroaki Maekawa; Wei Zhuang; Claudio Toniolo; Shaul Mukamel; Douglas J Tobias; Nien-Hui Ge
Journal:  J Phys Chem B       Date:  2009-09-03       Impact factor: 2.991

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