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Literature DB >> 16835694

The HUPO Brain Proteome Project--no need to hurry?

M Hamacher¹, K Marcus, A van Hall, H E Meyer, C Stephan.

Abstract

The HUPO Brain Proteome Project (HUPO BPP) is dedicated to the analysis of the brain proteome and has initiated two pilot studies in order to elaborate a standardised system for data collection and reprocessing. Samples of mouse brains (different developmental stages) and human brain tissue (biopsy and post-mortem samples) were shipped to different laboratories in Europe, Asia and the US that were invited to identify as many proteins as possible using their own approaches. In addition, a centralised data reprocessing strategy has been elaborated in an iterative way to generate highly reliable lists of identified proteins. This consortium could be a good example for a standardized proteomics workflow.

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Year: 2006 PMID： 16835694 DOI： 10.1007/s00702-006-0510-x

Source DB: PubMed Journal: J Neural Transm (Vienna) ISSN： 0300-9564 Impact factor: 3.575

23 in total

Review 1. HUPO initiatives relevant to clinical proteomics.

Authors: Sam Hanash
Journal: Mol Cell Proteomics Date: 2004-01-27 Impact factor: 5.911

2. The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data.

Authors: Steven Carr; Ruedi Aebersold; Michael Baldwin; Al Burlingame; Karl Clauser; Alexey Nesvizhskii
Journal: Mol Cell Proteomics Date: 2004-04-09 Impact factor: 5.911

Review 3. HUPO Brain Proteome Project: aims and needs in proteomics.

Authors: Michael Hamacher; Helmut E Meyer
Journal: Expert Rev Proteomics Date: 2005-01 Impact factor: 3.940

4. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database.

Authors: Gilbert S Omenn; David J States; Marcin Adamski; Thomas W Blackwell; Rajasree Menon; Henning Hermjakob; Rolf Apweiler; Brian B Haab; Richard J Simpson; James S Eddes; Eugene A Kapp; Robert L Moritz; Daniel W Chan; Alex J Rai; Arie Admon; Ruedi Aebersold; Jimmy Eng; William S Hancock; Stanley A Hefta; Helmut Meyer; Young-Ki Paik; Jong-Shin Yoo; Peipei Ping; Joel Pounds; Joshua Adkins; Xiaohong Qian; Rong Wang; Valerie Wasinger; Chi Yue Wu; Xiaohang Zhao; Rong Zeng; Alexander Archakov; Akira Tsugita; Ilan Beer; Akhilesh Pandey; Michael Pisano; Philip Andrews; Harald Tammen; David W Speicher; Samir M Hanash
Journal: Proteomics Date: 2005-08 Impact factor: 3.984

5. Sociomics! Using the IssueCrawler to map, monitor and engage with the global proteomics research network.

Authors: Ruth McNally
Journal: Proteomics Date: 2005-08 Impact factor: 3.984

6. 4(th) HUPO Brain Proteome Project Workshop in Munich, Germany.

Authors: Michael Hamacher; Christian Stephan; Nadine Palacios Bustamante; Andre van Hall; Katrin Marcus; Helmut E Meyer
Journal: Proteomics Date: 2006-01 Impact factor: 3.984

7. HUPO Brain Proteome Project Pilot Studies: bioinformatics at work.

Authors: Christian Stephan; Kai Reidegeld; Helmut E Meyer; Michael Hamacher
Journal: Proteomics Date: 2005-07 Impact factor: 3.984

Review 8. Building a foundation for the human proteome: the role of the Human Proteome Organization.

Authors: Sam Hanash
Journal: J Proteome Res Date: 2004 Mar-Apr Impact factor: 4.466

9. Optimized sample-processing time and peptide recovery for the mass spectrometric analysis of protein digests.

Authors: Doris E Terry; Edward Umstot; Dominic M Desiderio
Journal: J Am Soc Mass Spectrom Date: 2004-06 Impact factor: 3.109

10. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.

Authors: Henning Hermjakob; Luisa Montecchi-Palazzi; Gary Bader; Jérôme Wojcik; Lukasz Salwinski; Arnaud Ceol; Susan Moore; Sandra Orchard; Ugis Sarkans; Christian von Mering; Bernd Roechert; Sylvain Poux; Eva Jung; Henning Mersch; Paul Kersey; Michael Lappe; Yixue Li; Rong Zeng; Debashis Rana; Macha Nikolski; Holger Husi; Christine Brun; K Shanker; Seth G N Grant; Chris Sander; Peer Bork; Weimin Zhu; Akhilesh Pandey; Alvis Brazma; Bernard Jacq; Marc Vidal; David Sherman; Pierre Legrain; Gianni Cesareni; Ioannis Xenarios; David Eisenberg; Boris Steipe; Chris Hogue; Rolf Apweiler
Journal: Nat Biotechnol Date: 2004-02 Impact factor: 54.908

2 in total

Review 1. Proteomic studies on the development of the central nervous system and beyond.

Authors: Chenggang Zhang
Journal: Neurochem Res Date: 2010-06-25 Impact factor: 3.996

Review 2. Recent advances in neuroproteomics.

Authors: Erika C Andrade; Dilja D Krueger; Angus C Nairn
Journal: Curr Opin Mol Ther Date: 2007-06

2 in total