Literature DB >> 16834439

Functional DNAzymes organized into two-dimensional arrays.

Alejandra V Garibotti1, Scott M Knudsen, Andrew D Ellington, Nadrian C Seeman.   

Abstract

DNAzymes are catalytically active DNA molecules, which have previously been described in solution. Here, we organize these molecules into a series of two-dimensional (2D) arrays using a periodic arrangement of DNA structures based on the DNA double crossover motif. We demonstrate by means of atomic force microscopy that the DNAzymes are organized according to the design and that they retain their activity when attached in linear strings within the context of the 2D array.

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Year:  2006        PMID: 16834439      PMCID: PMC2536694          DOI: 10.1021/nl0609955

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  21 in total

1.  In vitro selection of kinase and ligase deoxyribozymes.

Authors:  Y Li; R R Breaker
Journal:  Methods       Date:  2001-02       Impact factor: 3.608

2.  Characterization of a DNA-cleaving deoxyribozyme.

Authors:  N Carmi; R R Breaker
Journal:  Bioorg Med Chem       Date:  2001-10       Impact factor: 3.641

Review 3.  DNA in a material world.

Authors:  Nadrian C Seeman
Journal:  Nature       Date:  2003-01-23       Impact factor: 49.962

4.  Pseudohexagonal 2D DNA crystals from double crossover cohesion.

Authors:  Baoquan Ding; Ruojie Sha; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2004-08-25       Impact factor: 15.419

5.  Design and self-assembly of two-dimensional DNA crystals.

Authors:  E Winfree; F Liu; L A Wenzler; N C Seeman
Journal:  Nature       Date:  1998-08-06       Impact factor: 49.962

6.  Mechanism and utility of an RNA-cleaving DNA enzyme.

Authors:  S W Santoro; G F Joyce
Journal:  Biochemistry       Date:  1998-09-22       Impact factor: 3.162

7.  Cleaving DNA with DNA.

Authors:  N Carmi; S R Balkhi; R R Breaker
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

8.  Construction of biologically functional bacterial plasmids in vitro.

Authors:  S N Cohen; A C Chang; H W Boyer; R B Helling
Journal:  Proc Natl Acad Sci U S A       Date:  1973-11       Impact factor: 11.205

9.  Nucleic acid junctions and lattices.

Authors:  N C Seeman
Journal:  J Theor Biol       Date:  1982-11-21       Impact factor: 2.691

10.  DNA double-crossover molecules.

Authors:  T J Fu; N C Seeman
Journal:  Biochemistry       Date:  1993-04-06       Impact factor: 3.162

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  11 in total

Review 1.  An overview of structural DNA nanotechnology.

Authors:  Nadrian C Seeman
Journal:  Mol Biotechnol       Date:  2007-07-12       Impact factor: 2.695

2.  Six-helix and eight-helix DNA nanotubes assembled from half-tubes.

Authors:  Akinori Kuzuya; Risheng Wang; Ruojie Sha; Nadrian C Seeman
Journal:  Nano Lett       Date:  2007-05-15       Impact factor: 11.189

3.  Molecular engineering of supramolecular scaffold coatings that can reduce static platelet adhesion.

Authors:  Aryavarta M S Kumar; Sona Sivakova; Justin D Fox; Jennifer E Green; Roger E Marchant; Stuart J Rowan
Journal:  J Am Chem Soc       Date:  2008-01-05       Impact factor: 15.419

4.  A polycatenated DNA scaffold for the one-step assembly of hierarchical nanostructures.

Authors:  Yossi Weizmann; Adam B Braunschweig; Ofer I Wilner; Zoya Cheglakov; Itamar Willner
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

5.  Moving Electrons Purposefully through Single Molecules and Nanostructures: A Tribute to the Science of Professor Nongjian Tao (1963-2020).

Authors:  Erica S Forzani; Huixin He; Joshua Hihath; Stuart Lindsay; Reginald M Penner; Shaopeng Wang; Bingqian Xu
Journal:  ACS Nano       Date:  2020-09-17       Impact factor: 15.881

6.  DNA nanotechnology for nucleic acid analysis: multifunctional molecular DNA machine for RNA detection.

Authors:  A J Cox; H N Bengtson; K H Rohde; D M Kolpashchikov
Journal:  Chem Commun (Camb)       Date:  2016-12-06       Impact factor: 6.222

7.  Self-assembly from milli- to nanoscales: methods and applications.

Authors:  M Mastrangeli; S Abbasi; C Varel; C Van Hoof; J-P Celis; K F Böhringer
Journal:  J Micromech Microeng       Date:  2009-07-08       Impact factor: 1.881

8.  DNA Antenna Tile-Associated Deoxyribozyme Sensor with Improved Sensitivity.

Authors:  Amanda J Cox; Hillary N Bengtson; Yulia V Gerasimova; Kyle H Rohde; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2016-09-13       Impact factor: 3.164

9.  Piezoresistivity in single DNA molecules.

Authors:  Christopher Bruot; Julio L Palma; Limin Xiang; Vladimiro Mujica; Mark A Ratner; Nongjian Tao
Journal:  Nat Commun       Date:  2015-09-04       Impact factor: 14.919

10.  Dynamic patterning programmed by DNA tiles captured on a DNA origami substrate.

Authors:  Hongzhou Gu; Jie Chao; Shou-Jun Xiao; Nadrian C Seeman
Journal:  Nat Nanotechnol       Date:  2009-02-15       Impact factor: 39.213

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