Literature DB >> 16834050

Vacuum-ultraviolet electronic circular dichroism of L-alanine in aqueous solution investigated by time-dependent density functional theory.

Takayuki Fukuyama1, Koichi Matsuo, Kunihiko Gekko.   

Abstract

The electronic circular dichoism (ECD) of L-alanine in the vacuum-ultraviolet region was calculated for various optimized structures using time-dependent density functional theory (TDDFT) to assign the CD spectrum observed experimentally in aqueous solution down to 140 nm [Matsuo, et al. Chem. Lett. 2002, 826]. The structure of L-alanine in vacuo was optimized using density functional theory (DFT) at the B3LYP/6-31G* level. Its hydrated structure was optimized with nine water molecules (six and three around carboxyl and amino groups, respectively) using DFT and a continuum model (Onsager model). The dihedral angles of carboxyl and amino groups in the optimized hydrated structure differed greatly from those in the crystal and in nonhydrated structures optimized using a continuum model only. The ECD spectrum calculated for the hydrated structure had two successive positive peaks with molar ellipticities of about 2000 deg cm2 dmol(-1) at around 205 and 185 nm, which were close to those observed experimentally. These positive peaks were attributable to n pi* transitions of the carboxyl group, with the latter peak also influenced by the pi pi* transition of the carboxyl group that originates below 175 nm. A small negative peak observed at around 252 nm was also predicted from the hydrated structure. These results demonstrate that the hydrated water molecules around the zwitterions play a crucial role in stabilizing the conformation of L-alanine in aqueous solution and that TDDFT is useful for the ab initio assignment of ECD spectra down to the vacuum-ultraviolet region.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16834050     DOI: 10.1021/jp051763h

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  1 in total

1.  Amino acid gas phase circular dichroism and implications for the origin of biomolecular asymmetry.

Authors:  Adrien D Garcia; Jérémie Topin; Cornelia Meinert; Nykola C Jones; Mira Diekmann; Robert Berger; Laurent Nahon; Søren V Hoffmann; Uwe J Meierhenrich
Journal:  Nat Commun       Date:  2022-01-26       Impact factor: 14.919

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.