Literature DB >> 16833984

Dimers of formic acid, acetic acid, formamide and pyrrole-2-carboxylic acid: an ab initio study.

Robert W Gora1, Sławomir J Grabowski, Jerzy Leszczynski.   

Abstract

The intermolecular hydrogen bonds in dimers of formic acid, acetic acid, and formamide were investigated. Additionally, three configurations of the pyrrole-2-carboxylic acid (PCA) dimer were studied to analyze how the pyrrole pi-electron system influences the carboxylic groups connected by double O-H...O hydrogen bonds. The ab initio calculations for the systems investigated were performed at MP2/6-311++G(d,p), MP2/aug-cc-pVDZ, and MP2/aug-cc-pVTZ//MP2/aug-cc-pVDZ levels of theory. The "atoms in molecules" theory of Bader was used and the analysis of the critical points was performed to study the nature of hydrogen bonds. The decomposition of the total interaction energy applied here reveals that the delocalization energy term is a particularly important attractive contribution in these systems, more important in the case of systems forming homonuclear O-H...O double hydrogen bonds than in the case of those connected through heteronuclear N-H...O bonds. Because the systems analyzed may be formally classified as the resonance-assisted hydrogen bonds (RAHBs), it seems that the dominant contribution from the delocalization interaction energy term is a distinguished feature of such interactions.

Entities:  

Year:  2005        PMID: 16833984     DOI: 10.1021/jp044072e

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  10 in total

1.  Theoretical description of hydrogen bonding in oxalic acid dimer and trimer based on the combined extended-transition-state energy decomposition analysis and natural orbitals for chemical valence (ETS-NOCV).

Authors:  Mariusz P Mitoraj; Rafał Kurczab; Marek Boczar; Artur Michalak
Journal:  J Mol Model       Date:  2010-05-28       Impact factor: 1.810

2.  How does modification of adenine by hydroxyl radical influence the stability and the nature of stacking interactions in adenine-cytosine complex?

Authors:  Zaneta Czyznikowska
Journal:  J Mol Model       Date:  2009-02-07       Impact factor: 1.810

3.  Gibbs ensemble Monte Carlo simulation using an optimized potential model: pure acetic acid and a mixture of it with ethylene.

Authors:  Minhua Zhang; Lihang Chen; Huaming Yang; Xijiang Sha; Jing Ma
Journal:  J Mol Model       Date:  2016-06-21       Impact factor: 1.810

4.  Interaction between phosphomolybdic anion and imidazolium cation in polyoxometalates-based ionic liquids: a quantum mechanics study.

Authors:  Yi Zheng; Jun Liu; Xiaoning Yang; Jun Wang
Journal:  J Mol Model       Date:  2014-10-25       Impact factor: 1.810

Review 5.  Energy decomposition analysis based on a block-localized wavefunction and multistate density functional theory.

Authors:  Yirong Mo; Peng Bao; Jiali Gao
Journal:  Phys Chem Chem Phys       Date:  2011-03-02       Impact factor: 3.676

6.  On the photophysics of 3,5,6-Trichlorosalicylic acid: spectroscopic study combined with Hartree-Fock and Density Functional Theory calculations.

Authors:  Bijan Kumar Paul; Anuva Samanta; Nikhil Guchhait
Journal:  J Fluoresc       Date:  2011-01-18       Impact factor: 2.217

7.  Functional role of Asp160 and the deprotonation mechanism of ammonium in the Escherichia coli ammonia channel protein AmtB.

Authors:  Yuchun Lin; Zexing Cao; Yirong Mo
Journal:  J Phys Chem B       Date:  2009-04-09       Impact factor: 2.991

8.  Nature of Intramolecular Resonance Assisted Hydrogen Bonding in Malonaldehyde and Its Saturated Analogue.

Authors:  Alice A Grosch; Stephanie C C van der Lubbe; Célia Fonseca Guerra
Journal:  J Phys Chem A       Date:  2018-02-02       Impact factor: 2.781

9.  Electron ionization of clusters containing the formamide molecule.

Authors:  Harvey-Andres Suarez-Moreno; Lauren Eckermann; Fabio Zappa; Eugene Arthur-Baidoo; Sylwia Ptasińska; Stephan Denifl
Journal:  Eur Phys J D At Mol Opt Phys       Date:  2021-10-20       Impact factor: 1.425

10.  Coexistence of Intra- and Intermolecular Hydrogen Bonds: Salicylic Acid and Salicylamide and Their Thiol Counterparts.

Authors:  Samira Gholami; Mohammad Aarabi; Sławomir J Grabowski
Journal:  J Phys Chem A       Date:  2021-02-16       Impact factor: 2.944

  10 in total

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