Literature DB >> 16833536

Benchmark database of barrier heights for heavy atom transfer, nucleophilic substitution, association, and unimolecular reactions and its use to test theoretical methods.

Yan Zhao1, Núria González-García, Donald G Truhlar.   

Abstract

A benchmark database of forward and reverse barrier heights for 19 non-hydrogen-transfer reactions has been developed by using Weizmann 1 calculations, and 29 DFT methods and 6 ab initio wave-function theory (WFT) methods have been tested against the new database as well as against an older database for hydrogen atom transfer reactions. Among the tested hybrid DFT methods without kinetic energy density, MPW1K is the most accurate model for calculations of barrier heights. Among the tested hybrid meta DFT methods, BB1K and MPWB1K are the two most accurate models for the calculations of barrier heights. Overall, the results show that BB1K and MPWB1K are the two best DFT methods for calculating barrier heights, followed in order by MPW1K, MPWKCIS1K, B1B95, MPW1B95, BH and HLYP, B97-2, mPW1PW91, and B98. The popular B3LYP method has a mean unsigned error four times larger than that of BB1K. Of the methods tested, QCISD(T) is the best ab initio WFT method for barrier height calculations, and QCISD is second best, but QCISD is outperformed by the BB1K, MPWB1K, MPWKCIS1K, and MPW1K methods.

Entities:  

Year:  2005        PMID: 16833536     DOI: 10.1021/jp045141s

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  51 in total

1.  Communication: A global hybrid generalized gradient approximation to the exchange-correlation functional that satisfies the second-order density-gradient constraint and has broad applicability in chemistry.

Authors:  Roberto Peverati; Donald G Truhlar
Journal:  J Chem Phys       Date:  2011-11-21       Impact factor: 3.488

2.  Three applications of path integrals: equilibrium and kinetic isotope effects, and the temperature dependence of the rate constant of the [1,5] sigmatropic hydrogen shift in (Z)-1,3-pentadiene.

Authors:  Tomáš Zimmermann; Jiří Vaníček
Journal:  J Mol Model       Date:  2010-04-30       Impact factor: 1.810

3.  Characterization of a complete cycle of acetylcholinesterase catalysis by ab initio QM/MM modeling.

Authors:  Alexander V Nemukhin; Sofia V Lushchekina; Anastasia V Bochenkova; Anna A Golubeva; Sergei D Varfolomeev
Journal:  J Mol Model       Date:  2008-03-15       Impact factor: 1.810

4.  Self-consistent generalized Kohn-Sham local hybrid functionals of screened exchange: Combining local and range-separated hybridization.

Authors:  Benjamin G Janesko; Aliaksandr V Krukau; Gustavo E Scuseria
Journal:  J Chem Phys       Date:  2008-09-28       Impact factor: 3.488

5.  Hartree-Fock orbitals significantly improve the reaction barrier heights predicted by semilocal density functionals.

Authors:  Benjamin G Janesko; Gustavo E Scuseria
Journal:  J Chem Phys       Date:  2008-06-28       Impact factor: 3.488

6.  Doubly hybrid density functional for accurate descriptions of nonbond interactions, thermochemistry, and thermochemical kinetics.

Authors:  Ying Zhang; Xin Xu; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-10       Impact factor: 11.205

7.  Critical Assessment of the Performance of Density Functional Methods for Several Atomic and Molecular Properties.

Authors:  Kevin E Riley; Bryan T Op't Holt; Kenneth M Merz
Journal:  J Chem Theory Comput       Date:  2007       Impact factor: 6.006

Review 8.  Quantum mechanical investigations of organocatalysis: mechanisms, reactivities, and selectivities.

Authors:  Paul Ha-Yeon Cheong; Claude Y Legault; Joann M Um; Nihan Çelebi-Ölçüm; K N Houk
Journal:  Chem Rev       Date:  2011-06-28       Impact factor: 60.622

9.  A systematical comparison of DFT methods in reproducing the interaction energies of halide series with protein moieties.

Authors:  Xiuhong Liu; Peng Zhou; Zhicai Shang
Journal:  J Mol Model       Date:  2011-09-09       Impact factor: 1.810

10.  Benchmarking density functional tight binding models for barrier heights and reaction energetics of organic molecules.

Authors:  Maja Gruden; Ljubica Andjeklović; Akkarapattiakal Kuriappan Jissy; Stepan Stepanović; Matija Zlatar; Qiang Cui; Marcus Elstner
Journal:  J Comput Chem       Date:  2017-07-24       Impact factor: 3.376

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