Literature DB >> 16833393

Exploring the lower limit in hydrogen bonds: analysis of weak C-H...O and C-H...pi interactions in substituted coumarins from charge density analysis.

Parthapratim Munshi1, Tayur N Guru Row.   

Abstract

Experimental electron densities in coumarin, 1-thiocoumarin, and 3-acetylcoumarin have been analyzed based on the X-ray diffraction data at 90 K. These compounds pack in the crystal lattice with weak C-H...O and C-H...pi interactions, and variations in charge density properties and derived local energy densities have been investigated in the regions of intermolecular interactions. Theoretical charge density calculations on crystals using the B3LYP/6-31G* method show remarkable agreement with the derived properties and energy densities from the experiment. The intermolecular interactions follow an exponential dependence of electron density and energy densities at the bond critical points. The Laplacian follows a "Morse-like" dependence on the length of the interaction line. Based on the set of criteria defined using the theory of "atoms in molecules", it has become possible to distinguish between a hydrogen bond (C-H...O) and a van der Waals interaction (C-H...pi). This has resulted in the identification of a "region of overlap" in terms of electron densities, energy densities, and mutual penetration of the hydrogen and acceptor atoms with respect to the interaction length. This approach suggests a possible tool to distinguish between the two types of interactions.

Entities:  

Year:  2005        PMID: 16833393     DOI: 10.1021/jp046388s

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  8 in total

1.  Dual Fluorescence and Solvatochromic Study on 3-Acyl Coumarins.

Authors:  S Samundeeswari; M V Kulkarni; Jayashree Yenagi; J Tonannavar
Journal:  J Fluoresc       Date:  2017-04-03       Impact factor: 2.217

Review 2.  The Relevance of Experimental Charge Density Analysis in Unraveling Noncovalent Interactions in Molecular Crystals.

Authors:  Sajesh P Thomas; Amol G Dikundwar; Sounak Sarkar; Mysore S Pavan; Rumpa Pal; Venkatesha R Hathwar; Tayur N Guru Row
Journal:  Molecules       Date:  2022-06-08       Impact factor: 4.927

3.  An experimental and theoretical charge density study of theophylline and malonic acid cocrystallization.

Authors:  Bryson A Hawkins; Jonathan J Du; Felcia Lai; Stephen A Stanton; Peter A Williams; Paul W Groundwater; James A Platts; Jacob Overgaard; David E Hibbs
Journal:  RSC Adv       Date:  2022-05-23       Impact factor: 4.036

4.  4-Bromo-methyl-6-meth-oxy-2H-chromen-2-one.

Authors:  Ramakrishna Gowda; Mahantesha Basanagouda; Manohar V Kulkarni; K V Arjuna Gowda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

5.  The Z' = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C-H...O hydrogen bonds.

Authors:  Somnath Dey; Andreas Schönleber; Swastik Mondal; Siriyara Jagannatha Prathapa; Sander van Smaalen; Finn Krebs Larsen
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-05-26

6.  Powder diffraction and crystal structure prediction identify four new coumarin polymorphs.

Authors:  Alexander G Shtukenberg; Qiang Zhu; Damien J Carter; Leslie Vogt; Johannes Hoja; Elia Schneider; Hongxing Song; Boaz Pokroy; Iryna Polishchuk; Alexandre Tkatchenko; Artem R Oganov; Andrew L Rohl; Mark E Tuckerman; Bart Kahr
Journal:  Chem Sci       Date:  2017-05-15       Impact factor: 9.825

7.  Incommensurate Phase in Λ-cobalt (III) Sepulchrate Trinitrate Governed by Highly Competitive N-H⋅⋅⋅O and C-H⋅⋅⋅O Hydrogen Bond Networks.

Authors:  Somnath Dey; Andreas Schönleber; Sander van Smaalen; Wolfgang Morgenroth; Finn Krebs Larsen
Journal:  Chemistry       Date:  2022-02-10       Impact factor: 5.020

Review 8.  Molecular Tailoring Approach for the Estimation of Intramolecular Hydrogen Bond Energy.

Authors:  Milind M Deshmukh; Shridhar R Gadre
Journal:  Molecules       Date:  2021-05-14       Impact factor: 4.411

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.