Literature DB >> 16826523

Submicroscopic deletion in patients with Williams-Beuren syndrome influences expression levels of the nonhemizygous flanking genes.

Giuseppe Merla1, Cédric Howald, Charlotte N Henrichsen, Robert Lyle, Carine Wyss, Marie-Thérèse Zabot, Stylianos E Antonarakis, Alexandre Reymond.   

Abstract

Genomic imbalance is a common cause of phenotypic abnormalities. We measured the relative expression level of genes that map within the microdeletion that causes Williams-Beuren syndrome and within its flanking regions. We found, unexpectedly, that not only hemizygous genes but also normal-copy neighboring genes show decreased relative levels of expression. Our results suggest that not only the aneuploid genes but also the flanking genes that map several megabases away from a genomic rearrangement should be considered possible contributors to the phenotypic variation in genomic disorders.

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Year:  2006        PMID: 16826523      PMCID: PMC1559497          DOI: 10.1086/506371

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  57 in total

1.  A 1.5 million-base pair inversion polymorphism in families with Williams-Beuren syndrome.

Authors:  L R Osborne; M Li; B Pober; D Chitayat; J Bodurtha; A Mandel; T Costa; T Grebe; S Cox; L C Tsui; S W Scherer
Journal:  Nat Genet       Date:  2001-11       Impact factor: 38.330

2.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

3.  VI. Genome structure and cognitive map of Williams syndrome.

Authors:  J R Korenberg; X N Chen; H Hirota; Z Lai; U Bellugi; D Burian; B Roe; R Matsuoka
Journal:  J Cogn Neurosci       Date:  2000       Impact factor: 3.225

4.  Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome.

Authors:  Ge Liu; Shaying Zhao; Jeffrey A Bailey; S Cenk Sahinalp; Can Alkan; Eray Tuzun; Eric D Green; Evan E Eichler
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

5.  Detection of an atypical 7q11.23 deletion in Williams syndrome patients which does not include the STX1A and FZD3 genes.

Authors:  A Botta; G Novelli; A Mari; A Novelli; M Sabani; J Korenberg; L R Osborne; M C Digilio; A Giannotti; B Dallapiccola
Journal:  J Med Genet       Date:  1999-06       Impact factor: 6.318

6.  Fine-scale comparative mapping of the human 7q11.23 region and the orthologous region on mouse chromosome 5G: the low-copy repeats that flank the Williams-Beuren syndrome deletion arose at breakpoint sites of an evolutionary inversion(s).

Authors:  M C Valero; O de Luis; J Cruces; L A Pérez Jurado
Journal:  Genomics       Date:  2000-10-01       Impact factor: 5.736

Review 7.  Familial Williams-Beuren syndrome showing varying clinical expression.

Authors:  R Pankau; R Siebert; M Kautza; R Schneppenheim; A Gosch; A Wessel; C J Partsch
Journal:  Am J Med Genet       Date:  2001-02-01

8.  Characterization of two novel genes, WBSCR20 and WBSCR22, deleted in Williams-Beuren syndrome.

Authors:  A Doll; K H Grzeschik
Journal:  Cytogenet Cell Genet       Date:  2001

9.  Identification of additional transcripts in the Williams-Beuren syndrome critical region.

Authors:  Giuseppe Merla; Catherine Ucla; Michel Guipponi; Alexandre Reymond
Journal:  Hum Genet       Date:  2002-03-28       Impact factor: 4.132

10.  WBSCR14, a gene mapping to the Williams--Beuren syndrome deleted region, is a new member of the Mlx transcription factor network.

Authors:  S Cairo; G Merla; F Urbinati; A Ballabio; A Reymond
Journal:  Hum Mol Genet       Date:  2001-03-15       Impact factor: 6.150

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  83 in total

1.  Transcriptome profile in Williams-Beuren syndrome lymphoblast cells reveals gene pathways implicated in glucose intolerance and visuospatial construction deficits.

Authors:  Anna Antonell; Mireia Vilardell; Luis A Pérez Jurado
Journal:  Hum Genet       Date:  2010-04-17       Impact factor: 4.132

2.  Copy number variation modifies expression time courses.

Authors:  Evelyne Chaignat; Emilie Aït Yahya-Graison; Charlotte N Henrichsen; Jacqueline Chrast; Frédéric Schütz; Sylvain Pradervand; Alexandre Reymond
Journal:  Genome Res       Date:  2010-11-17       Impact factor: 9.043

3.  An atypical deletion of the Williams-Beuren syndrome interval implicates genes associated with defective visuospatial processing and autism.

Authors:  Lisa Edelmann; Aaron Prosnitz; Sherly Pardo; Jahnavi Bhatt; Ninette Cohen; Tara Lauriat; Leonid Ouchanov; Patricia J González; Elina R Manghi; Pamela Bondy; Marcela Esquivel; Silvia Monge; Marietha F Delgado; Alessandra Splendore; Uta Francke; Barbara K Burton; L Alison McInnes
Journal:  J Med Genet       Date:  2006-09-13       Impact factor: 6.318

4.  3p-- syndrome defines a hearing loss locus in 3p25.3.

Authors:  Brendan J McCullough; Joe C Adams; Dustin J Shilling; M Patrick Feeney; Kathleen C Y Sie; Bruce L Tempel
Journal:  Hear Res       Date:  2007-01-08       Impact factor: 3.208

Review 5.  From microscopes to microarrays: dissecting recurrent chromosomal rearrangements.

Authors:  Beverly S Emanuel; Sulagna C Saitta
Journal:  Nat Rev Genet       Date:  2007-11       Impact factor: 53.242

6.  Segmental copy number variation shapes tissue transcriptomes.

Authors:  Charlotte N Henrichsen; Nicolas Vinckenbosch; Sebastian Zöllner; Evelyne Chaignat; Sylvain Pradervand; Frédéric Schütz; Manuel Ruedi; Henrik Kaessmann; Alexandre Reymond
Journal:  Nat Genet       Date:  2009-03-08       Impact factor: 38.330

7.  A Potential Contributory Role for Ciliary Dysfunction in the 16p11.2 600 kb BP4-BP5 Pathology.

Authors:  Eugenia Migliavacca; Christelle Golzio; Katrin Männik; Ian Blumenthal; Edwin C Oh; Louise Harewood; Jack A Kosmicki; Maria Nicla Loviglio; Giuliana Giannuzzi; Loyse Hippolyte; Anne M Maillard; Ali Abdullah Alfaiz; Mieke M van Haelst; Joris Andrieux; James F Gusella; Mark J Daly; Jacques S Beckmann; Sébastien Jacquemont; Michael E Talkowski; Nicholas Katsanis; Alexandre Reymond
Journal:  Am J Hum Genet       Date:  2015-04-30       Impact factor: 11.025

8.  Population genomics of human gene expression.

Authors:  Barbara E Stranger; Alexandra C Nica; Matthew S Forrest; Antigone Dimas; Christine P Bird; Claude Beazley; Catherine E Ingle; Mark Dunning; Paul Flicek; Daphne Koller; Stephen Montgomery; Simon Tavaré; Panos Deloukas; Emmanouil T Dermitzakis
Journal:  Nat Genet       Date:  2007-09-16       Impact factor: 38.330

9.  Negative autoregulation of GTF2IRD1 in Williams-Beuren syndrome via a novel DNA binding mechanism.

Authors:  Stephen J Palmer; Nicole Santucci; Jocelyn Widagdo; Sara J Bontempo; Kylie M Taylor; Enoch S E Tay; Jeff Hook; Frances Lemckert; Peter W Gunning; Edna C Hardeman
Journal:  J Biol Chem       Date:  2009-12-09       Impact factor: 5.157

Review 10.  Mechanisms and treatment of cardiovascular disease in Williams-Beuren syndrome.

Authors:  Barbara R Pober; Mark Johnson; Zsolt Urban
Journal:  J Clin Invest       Date:  2008-05       Impact factor: 14.808

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