Literature DB >> 16822701

Streamlining lead discovery by aligning in silico and high-throughput screening.

John W Davies1, Meir Glick, Jeremy L Jenkins.   

Abstract

Lead discovery in the pharmaceutical environment is largely an industrial-scale process in which it is typical to screen 1-5 million compounds in a matter of weeks using High Throughput Screening (HTS). This process is a very costly endeavor. Typically a HTS campaign of 1 million compounds will cost anywhere from $500000 to $1000000. There is consequently a great deal of pressure to maximize the return on investment by finding fast and more effective ways to screen. A panacea that has emerged over the past few years to help address this issue is in silico screening. In silico screening is now incorporated in all areas of lead discovery; from target identification and library design, to hit analysis and compound profiling. However, as lead discovery has evolved over the past few years, so has the role of in silico screening.

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Year:  2006        PMID: 16822701     DOI: 10.1016/j.cbpa.2006.06.022

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  10 in total

Review 1.  From laptop to benchtop to bedside: structure-based drug design on protein targets.

Authors:  Lu Chen; John K Morrow; Hoang T Tran; Sharangdhar S Phatak; Lei Du-Cuny; Shuxing Zhang
Journal:  Curr Pharm Des       Date:  2012       Impact factor: 3.116

2.  Design of protein membrane interaction inhibitors by virtual ligand screening, proof of concept with the C2 domain of factor V.

Authors:  Kenneth Segers; Olivier Sperandio; Markus Sack; Rainer Fischer; Maria A Miteva; Jan Rosing; Gerry A F Nicolaes; Bruno O Villoutreix
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-23       Impact factor: 11.205

3.  Structural models in the assessment of protein druggability based on HTS data.

Authors:  Anvita Gupta; Arun Kumar Gupta; Kothandaraman Seshadri
Journal:  J Comput Aided Mol Des       Date:  2009-05-29       Impact factor: 3.686

4.  Scoring confidence index: statistical evaluation of ligand binding mode predictions.

Authors:  Maria I Zavodszky; Andrew W Stumpff-Kane; David J Lee; Michael Feig
Journal:  J Comput Aided Mol Des       Date:  2009-01-20       Impact factor: 3.686

5.  Designing focused chemical libraries enriched in protein-protein interaction inhibitors using machine-learning methods.

Authors:  Christelle Reynès; Hélène Host; Anne-Claude Camproux; Guillaume Laconde; Florence Leroux; Anne Mazars; Benoit Deprez; Robin Fahraeus; Bruno O Villoutreix; Olivier Sperandio
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

Review 6.  On the design of broad based screening assays to identify potential pharmacological chaperones of protein misfolding diseases.

Authors:  Subhashchandra Naik; Na Zhang; Phillip Gao; Mark T Fisher
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

7.  Virtual-screening workflow tutorials and prospective results from the Teach-Discover-Treat competition 2014 against malaria.

Authors:  Sereina Riniker; Gregory A Landrum; Floriane Montanari; Santiago D Villalba; Julie Maier; Johanna M Jansen; W Patrick Walters; Anang A Shelat
Journal:  F1000Res       Date:  2017-07-17

Review 8.  Insight into the Development of PET Radiopharmaceuticals for Oncology.

Authors:  Joseph Lau; Etienne Rousseau; Daniel Kwon; Kuo-Shyan Lin; François Bénard; Xiaoyuan Chen
Journal:  Cancers (Basel)       Date:  2020-05-21       Impact factor: 6.639

9.  Inside the mind of a medicinal chemist: the role of human bias in compound prioritization during drug discovery.

Authors:  Peter S Kutchukian; Nadya Y Vasilyeva; Jordan Xu; Mika K Lindvall; Michael P Dillon; Meir Glick; John D Coley; Natasja Brooijmans
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

10.  Screening Outside the Catalytic Site: Inhibition of Macromolecular Inter-actions Through Structure-Based Virtual Ligand Screening Experiments.

Authors:  Olivier Sperandio; Maria A Miteva; Kenneth Segers; Gerry A F Nicolaes; Bruno O Villoutreix
Journal:  Open Biochem J       Date:  2008-03-10
  10 in total

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