Literature DB >> 16821840

Logic gates and elementary computing by enzymes.

Ronan Baron1, Oleg Lioubashevski, Eugenii Katz, Tamara Niazov, Itamar Willner.   

Abstract

Different selected enzymes, glucose oxidase (GOx), catalase (Cat), glucose dehydrogenase (GDH), horseradish peroxidase (HRP), and formaldehyde dehydrogenase (FDH), are used alone or coupled to construct eight different logic gates. The added substrates for the respective enzymes, glucose and H(2)O(2), act as the gate inputs, while the biocatalytically generated gluconic acid or NADH are the output signals that follow the operation of the gates. Different enzyme-based gates are XOR, INHIBIT A, INHIBIT B, AND, OR, NOR, Identity and Inverter gates. By combining the AND and XOR or the XOR and INHIBIT A gates, the half-adder and half-subtractor are constructed, respectively, opening the way to elementary computing by the use of enzymes.

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Year:  2006        PMID: 16821840     DOI: 10.1021/jp0568327

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  11 in total

Review 1.  Enzyme-based logic systems and their applications for novel multi-signal-responsive materials.

Authors:  Marcos Pita; Sergiy Minko; Evgeny Katz
Journal:  J Mater Sci Mater Med       Date:  2008-10-07       Impact factor: 3.896

Review 2.  Biocomputers: from test tubes to live cells.

Authors:  Yaakov Benenson
Journal:  Mol Biosyst       Date:  2009-04-15

3.  Concatenated logic gates using four coupled biocatalysts operating in series.

Authors:  Tamara Niazov; Ronan Baron; Eugenii Katz; Oleg Lioubashevski; Itamar Willner
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-06       Impact factor: 11.205

Review 4.  Synthesizing biomolecule-based Boolean logic gates.

Authors:  Takafumi Miyamoto; Shiva Razavi; Robert DeRose; Takanari Inoue
Journal:  ACS Synth Biol       Date:  2013-02-15       Impact factor: 5.110

5.  All-photonic multifunctional molecular logic device.

Authors:  Joakim Andréasson; Uwe Pischel; Stephen D Straight; Thomas A Moore; Ana L Moore; Devens Gust
Journal:  J Am Chem Soc       Date:  2011-05-12       Impact factor: 15.419

6.  Elements of the cellular metabolic structure.

Authors:  Ildefonso M De la Fuente
Journal:  Front Mol Biosci       Date:  2015-04-28

Review 7.  The biological microprocessor, or how to build a computer with biological parts.

Authors:  Gerd Hg Moe-Behrens
Journal:  Comput Struct Biotechnol J       Date:  2013-06-26       Impact factor: 7.271

8.  Molecular computing: paths to chemical Turing machines.

Authors:  Shaji Varghese; Johannes A A W Elemans; Alan E Rowan; Roeland J M Nolte
Journal:  Chem Sci       Date:  2015-08-06       Impact factor: 9.825

Review 9.  Fabrication of Electrochemical-Based Bioelectronic Device and Biosensor Composed of Biomaterial-Nanomaterial Hybrid.

Authors:  Mohsen Mohammadniaei; Chulhwan Park; Junhong Min; Hiesang Sohn; Taek Lee
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

10.  Protease circuits for processing biological information.

Authors:  Brandon Alexander Holt; Gabriel A Kwong
Journal:  Nat Commun       Date:  2020-10-06       Impact factor: 14.919

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