Literature DB >> 16820423

ZooDDD: a cross-species database for digital differential display analysis.

Yun-Ching Chen1, Chung-Der Hsiao, Wen-Dar Lin, Chung-Ming Hu, Pung-Pung Hwang, Jan-Ming Ho.   

Abstract

UNLABELLED: In this article, we combined EST information from the UniGene database and orthologous relationships from the Ensembl database to construct a ZooDDD database. The primary function of ZooDDD is to mine evolutionary conserved, highly expressed, tissue-specific orthologues in model animals. The candidate genes of interest derived from the ZooDDD database will provide biologists with a good step for comparing the expression, functions and evolution of animal genomes. AVAILABILITY: http://bio301.iis.sinica.edu.tw/~ZooDDDNew/main.php.

Mesh：

Year:  2006        PMID： 16820423     DOI： 10.1093/bioinformatics/btl358

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  Construction and application of an electronic spatiotemporal expression profile and gene ontology analysis platform based on the EST database of the silkworm, Bombyx mori.

Authors:  Li-Ping Gan; Wen-Yu Zhang; Yan-Shan Niu; Li Xu; Jian Xi; Ming-Ming Ji; Shi-Qing Xu
Journal:  J Insect Sci       Date:  2010       Impact factor: 1.857

2.  CancerEST: a web-based tool for automatic meta-analysis of public EST data.

Authors:  Julia Feichtinger; Ramsay J McFarlane; Lee D Larcombe
Journal:  Database (Oxford)       Date:  2014-04-07       Impact factor: 3.451

3.  Identification and characterization of germ cell genes expressed in the F9 testicular teratoma stem cell line.

Authors:  Jun Tae Kwon; Sora Jin; Heejin Choi; Jihye Kim; Juri Jeong; Jaehwan Kim; Youil Kim; Byung-Nam Cho; Chunghee Cho
Journal:  PLoS One       Date:  2014-08-25       Impact factor: 3.240

4.  Expression of uncharacterized male germ cell-specific genes and discovery of novel sperm-tail proteins in mice.

Authors:  Jun Tae Kwon; Sera Ham; Suyeon Jeon; Youil Kim; Seungmin Oh; Chunghee Cho
Journal:  PLoS One       Date:  2017-07-25       Impact factor: 3.240

5.  Genes associated with agronomic traits in non-heading Chinese cabbage identified by expression profiling.

Authors:  Xiaoming Song; Ying Li; Tongkun Liu; Weike Duan; Zhinan Huang; Li Wang; Huawei Tan; Xilin Hou
Journal:  BMC Plant Biol       Date:  2014-03-22       Impact factor: 4.215

6.  Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases.

Authors:  Olivier Tassy; Olivier Pourquié
Journal:  Nucleic Acids Res       Date:  2013-09-12       Impact factor: 16.971
  6 in total

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