Literature DB >> 16819590

MTH187 from Methanobacterium thermoautotrophicum has three HEAT-like repeats.

Olivier Julien1, Isabelle Gignac, Anna Hutton, Adelinda Yee, Cheryl H Arrowsmith, Stéphane M Gagné.   

Abstract

With the completion of genome sequencing projects, there are a large number of proteins for which we have little or no functional information. Since protein function is closely related to three-dimensional conformation, structural proteomics is one avenue where the role of proteins with unknown function can be investigated. In the present structural project, the structure of MTH187 has been determined by solution-state NMR spectroscopy. This protein of 12.4 kDa is one of the 424 non-membrane proteins that were cloned and purified for the structural proteomic project of Methanobacterium thermoautotrophicum [Christendat, D., Yee, A., Dharamsi, A., Kluger, Y., Gerstein, M., Arrowsmith, C.H. and Edwards, A.M. (2000) Prog. Biophys. Mol. Biol., 73, 339-345]. Methanobacterium thermoautotrophicum is a thermophilic archaeon that grows optimally at 65 degrees C. A particular characteristic of this microorganism is its ability to generate methane from carbon dioxide and hydrogen [Smith, D.R., Doucette-Stamm, L.A., Deloughery, C., Lee, H., Dubois, J., Aldredge, T., Bashirzadeh, R., Blakely, D., Cook, R., Gilbert, K., Harrison, D., Hoang, L., Keagle, P., Lumm, W., Pothier, B., Qiu, D., Spadafora, R., Vicaire, R., Wang, Y., Wierzbowski, J., Gibson, R., Jiwani, N., Caruso, A., Bush, D., Reeve, J. N. et al. (1997) J. Bacteriol., 179, 7135-7155].

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Year:  2006        PMID: 16819590     DOI: 10.1007/s10858-006-0029-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

Review 1.  Structural proteomics: prospects for high throughput sample preparation.

Authors:  D Christendat; A Yee; A Dharamsi; Y Kluger; M Gerstein; C H Arrowsmith; A M Edwards
Journal:  Prog Biophys Mol Biol       Date:  2000       Impact factor: 3.667

Review 2.  Comparative protein structure modeling of genes and genomes.

Authors:  M A Martí-Renom; A C Stuart; A Fiser; R Sánchez; F Melo; A Sali
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

Review 3.  Comparison of ARM and HEAT protein repeats.

Authors:  M A Andrade; C Petosa; S I O'Donoghue; C W Müller; P Bork
Journal:  J Mol Biol       Date:  2001-05-25       Impact factor: 5.469

4.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

5.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

6.  Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.

Authors:  I N Shindyalov; P E Bourne
Journal:  Protein Eng       Date:  1998-09

7.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Protein structure comparison by alignment of distance matrices.

Authors:  L Holm; C Sander
Journal:  J Mol Biol       Date:  1993-09-05       Impact factor: 5.469

10.  E. coli aconitase B structure reveals a HEAT-like domain with implications for protein-protein recognition.

Authors:  Colin H Williams; Timothy J Stillman; Vladimir V Barynin; Svetlana E Sedelnikova; Yue Tang; Jeffrey Green; John R Guest; Peter J Artymiuk
Journal:  Nat Struct Biol       Date:  2002-06
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  1 in total

Review 1.  Biliprotein maturation: the chromophore attachment.

Authors:  H Scheer; K-H Zhao
Journal:  Mol Microbiol       Date:  2008-02-19       Impact factor: 3.501

  1 in total

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