Literature DB >> 16815902

The denaturation transition of DNA in mixed solvents.

Boualem Hammouda1, David Worcester.   

Abstract

The helix-to-coil denaturation transition in DNA has been investigated in mixed solvents at high concentration using ultraviolet light absorption spectroscopy and small-angle neutron scattering. Two solvents have been used: water and ethylene glycol. The "melting" transition temperature was found to be 94 degrees C for 4% mass fraction DNA/d-water and 38 degrees C for 4% mass fraction DNA/d-ethylene glycol. The DNA melting transition temperature was found to vary linearly with the solvent fraction in the mixed solvents case. Deuterated solvents (d-water and d-ethylene glycol) were used to enhance the small-angle neutron scattering signal and 0.1M NaCl (or 0.0058 g/g mass fraction) salt concentration was added to screen charge interactions in all cases. DNA structural information was obtained by small-angle neutron scattering, including a correlation length characteristic of the inter-distance between the hydrogen-containing (desoxyribose sugar-amine base) groups. This correlation length was found to increase from 8.5 to 12.3 A across the melting transition. Ethylene glycol and water mixed solvents were found to mix randomly in the solvation region in the helix phase, but nonideal solvent mixing was found in the melted coil phase. In the coil phase, solvent mixtures are more effective solvating agents than either of the individual solvents. Once melted, DNA coils behave like swollen water-soluble synthetic polymer chains.

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Year:  2006        PMID: 16815902      PMCID: PMC1557553          DOI: 10.1529/biophysj.106.083691

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

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Journal:  J Chem Phys       Date:  2004-02-22       Impact factor: 3.488

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

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  9 in total

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Authors:  Rohan A Hule; Radhika P Nagarkar; Aysegul Altunbas; Hassna R Ramay; Monica C Branco; Joel P Schneider; Darrin J Pochan
Journal:  Faraday Discuss       Date:  2008       Impact factor: 4.008

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Authors:  Paul A Beales; T Kyle Vanderlick
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

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Journal:  J Biol Phys       Date:  2015-06-09       Impact factor: 1.365

Review 4.  The structural stability and catalytic activity of DNA and RNA oligonucleotides in the presence of organic solvents.

Authors:  Shu-Ichi Nakano; Naoki Sugimoto
Journal:  Biophys Rev       Date:  2016-01-11

5.  Dependence of Self-Assembled Peptide Hydrogel Network Structure on Local Fibril Nanostructure.

Authors:  Rohan A Hule; Radhika P Nagarkar; Boualem Hammouda; Joel P Schneider; Darrin J Pochan
Journal:  Macromolecules       Date:  2009       Impact factor: 5.985

6.  Structural Analysis and Mechanical Characterization of Hyaluronic Acid-Based Doubly Cross-Linked Networks.

Authors:  Amit K Jha; Rohan A Hule; Tong Jiao; Sean S Teller; Rodney J Clifton; Randall L Duncan; Darrin J Pochan; Xinqiao Jia
Journal:  Macromolecules       Date:  2009       Impact factor: 5.985

7.  Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory.

Authors:  Miki Nakano; Hisae Tateishi-Karimata; Shigenori Tanaka; Florence Tama; Osamu Miyashita; Shu-Ichi Nakano; Naoki Sugimoto
Journal:  Nucleic Acids Res       Date:  2015-11-03       Impact factor: 16.971

8.  Compatible solute influence on nucleic acids: many questions but few answers.

Authors:  Matthias Kurz
Journal:  Saline Syst       Date:  2008-06-03

9.  The incipient denaturation mechanism of DNA.

Authors:  Min Xu; Tinghui Dai; Yanwei Wang; Guangcan Yang
Journal:  RSC Adv       Date:  2022-08-17       Impact factor: 4.036

  9 in total

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