Literature DB >> 16815576

DNA mimicry by proteins and the control of enzymatic activity on DNA.

David T F Dryden1.   

Abstract

Cells are unable to perform any function on their DNA in the absence of proteins, and it is of vital importance that these proteins only perform their function at appropriate times during the cell cycle. Thus, DNA-binding proteins are always controlled by a wide range of other factors, primarily other proteins. These controlling factors usually block access of the protein to the DNA, often operating by simple competitive inhibition. However, it has recently been demonstrated that DNA-binding proteins can be controlled by the direct binding of the control protein to the DNA-binding site on the first protein. The structures of these control proteins have revealed that they mimic the structure and electrostatics of DNA. This review highlights the roles of DNA mimics in the control of DNA-binding proteins, suggests other possible candidate proteins using DNA mimicry, and puts forward a range of potential uses of DNA mimics.

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Year:  2006        PMID: 16815576     DOI: 10.1016/j.tibtech.2006.06.004

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  24 in total

1.  Solution structure and refolding of the Mycobacterium tuberculosis pentapeptide repeat protein MfpA.

Authors:  Sergei Khrapunov; Huiyong Cheng; Subray Hegde; John Blanchard; Michael Brenowitz
Journal:  J Biol Chem       Date:  2008-10-31       Impact factor: 5.157

2.  Thermodynamics, kinetics, and salt dependence of folding of YopM, a large leucine-rich repeat protein.

Authors:  Ellen Kloss; Doug Barrick
Journal:  J Mol Biol       Date:  2008-09-04       Impact factor: 5.469

3.  Noncanonical DNA-binding mode of repressor and its disassembly by antirepressor.

Authors:  Minsik Kim; Hee Jung Kim; Sang Hyeon Son; Hye Jin Yoon; Youngbin Lim; Jong Woo Lee; Yeong-Jae Seok; Kyeong Sik Jin; Yeon Gyu Yu; Seong Keun Kim; Sangryeol Ryu; Hyung Ho Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-20       Impact factor: 11.205

4.  Carboxylate-functionalized foldamer inhibitors of HIV-1 integrase and Topoisomerase 1: artificial analogues of DNA mimic proteins.

Authors:  Valentina Corvaglia; Daniel Carbajo; Panchami Prabhakaran; Krzysztof Ziach; Pradeep Kumar Mandal; Victor Dos Santos; Carole Legeay; Rachel Vogel; Vincent Parissi; Philippe Pourquier; Ivan Huc
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

5.  White spot syndrome virus protein ICP11: A histone-binding DNA mimic that disrupts nucleosome assembly.

Authors:  Hao-Ching Wang; Han-Ching Wang; Tzu-Ping Ko; Yu-May Lee; Jiann-Horng Leu; Chun-Han Ho; Wei-Pang Huang; Chu-Fang Lo; Andrew H-J Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-18       Impact factor: 11.205

6.  A model for the evolution of prokaryotic DNA restriction-modification systems based upon the structural malleability of Type I restriction-modification enzymes.

Authors:  Edward K M Bower; Laurie P Cooper; Gareth A Roberts; John H White; Yvette Luyten; Richard D Morgan; David T F Dryden
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

7.  Exploring the DNA mimicry of the Ocr protein of phage T7.

Authors:  Gareth A Roberts; Augoustinos S Stephanou; Nisha Kanwar; Angela Dawson; Laurie P Cooper; Kai Chen; Margaret Nutley; Alan Cooper; Garry W Blakely; David T F Dryden
Journal:  Nucleic Acids Res       Date:  2012-06-07       Impact factor: 16.971

8.  Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance.

Authors:  Stephen A McMahon; Gareth A Roberts; Kenneth A Johnson; Laurie P Cooper; Huanting Liu; John H White; Lester G Carter; Bansi Sanghvi; Muse Oke; Malcolm D Walkinshaw; Garry W Blakely; James H Naismith; David T F Dryden
Journal:  Nucleic Acids Res       Date:  2009-06-08       Impact factor: 16.971

9.  Dissection of the DNA mimicry of the bacteriophage T7 Ocr protein using chemical modification.

Authors:  Augoustinos S Stephanou; Gareth A Roberts; Laurie P Cooper; David J Clarke; Andrew R Thomson; C Logan MacKay; Margaret Nutley; Alan Cooper; David T F Dryden
Journal:  J Mol Biol       Date:  2009-06-10       Impact factor: 5.469

10.  A Bacteriophage DNA Mimic Protein Employs a Non-specific Strategy to Inhibit the Bacterial RNA Polymerase.

Authors:  Zhihao Wang; Hongliang Wang; Nancy Mulvenna; Maximo Sanz-Hernandez; Peipei Zhang; Yanqing Li; Jia Ma; Yawen Wang; Steve Matthews; Sivaramesh Wigneshweraraj; Bing Liu
Journal:  Front Microbiol       Date:  2021-06-02       Impact factor: 5.640

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