Literature DB >> 16815215

Microarrays in Parkinson's disease: a systematic approach.

Renee M Miller1, Howard J Federoff.   

Abstract

Neurological disease (ND) is one of the greatest challenges facing our population, from medical, financial, and social perspectives. The application of new research approaches to understand the underlying pathogenesis of ND is critical. In this article, we review the use of microarray analysis in Parkinson's disease (PD). Microarrays have tremendous power, simultaneously querying the expression of tens of thousands of genes from a given biological sample. Coupled with impressive advances in statistical tools for analyzing large, complex data sets, well-designed microarray experiments are poised to make a big impact in the field of ND. Parkinson's disease is a devastating neurodegenerative disease well suited to a systems-based microarray analysis. Genetic and environmental rodent models of PD emulate many of the cardinal features of human PD, providing the unique opportunity to compare gene expression profiles from different etiologies of the same disease. The elucidation of important gene expression patterns during disease will make possible identification of genetic susceptibility markers, biomarkers of disease progression, and new therapeutic targets.

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Year:  2006        PMID: 16815215      PMCID: PMC3593377          DOI: 10.1016/j.nurx.2006.05.008

Source DB:  PubMed          Journal:  NeuroRx        ISSN: 1545-5343


  40 in total

1.  A gene expression profile of Alzheimer's disease.

Authors:  J F Loring; X Wen; J M Lee; J Seilhamer; R Somogyi
Journal:  DNA Cell Biol       Date:  2001-11       Impact factor: 3.311

2.  Gene expression analysis in N-methyl-4-phenyl-1,2,3,6-tetrahydropyridine mice model of Parkinson's disease using cDNA microarray: effect of R-apomorphine.

Authors:  E Grünblatt; S Mandel; G Maor; M B Youdim
Journal:  J Neurochem       Date:  2001-07       Impact factor: 5.372

3.  Fate of midbrain dopaminergic neurons controlled by the engrailed genes.

Authors:  H H Simon; H Saueressig; W Wurst; M D Goulding; D D O'Leary
Journal:  J Neurosci       Date:  2001-05-01       Impact factor: 6.167

Review 4.  Uncoupling proteins--a new family of proteins with unknown function.

Authors:  Charlotte Erlanson-Albertsson
Journal:  Nutr Neurosci       Date:  2002-02       Impact factor: 4.994

Review 5.  Synucleinopathies: clinical and pathological implications.

Authors:  J E Galvin; V M Lee; J Q Trojanowski
Journal:  Arch Neurol       Date:  2001-02

6.  Increased huntingtin protein length reduces the number of polyglutamine-induced gene expression changes in mouse models of Huntington's disease.

Authors:  Edmond Y W Chan; Ruth Luthi-Carter; Andrew Strand; Steven M Solano; Sarah A Hanson; Molly M DeJohn; Charles Kooperberg; Kathryn O Chase; Marian DiFiglia; Anne B Young; Blair R Leavitt; Jang-Ho J Cha; Neil Aronin; Michael R Hayden; James M Olson
Journal:  Hum Mol Genet       Date:  2002-08-15       Impact factor: 6.150

Review 7.  Pathogenic role of glial cells in Parkinson's disease.

Authors:  Peter Teismann; Kim Tieu; Oren Cohen; Dong-Kug Choi; Du Chu Wu; Daniel Marks; Miquel Vila; Vernice Jackson-Lewis; Serge Przedborski
Journal:  Mov Disord       Date:  2003-02       Impact factor: 10.338

Review 8.  Convergent pathobiologic model of Parkinson's disease.

Authors:  Kathleen A Maguire-Zeiss; Howard J Federoff
Journal:  Ann N Y Acad Sci       Date:  2003-06       Impact factor: 5.691

9.  Experimental parkinsonism modulates multiple genes involved in the transduction of dopaminergic signals in the striatum.

Authors:  Maddalena Napolitano; Diego Centonze; Angelica Calce; Barbara Picconi; Stefania Spiezia; Alberto Gulino; Giorgio Bernardi; Paolo Calabresi
Journal:  Neurobiol Dis       Date:  2002-08       Impact factor: 5.996

10.  Gene expression profiling of 12633 genes in Alzheimer hippocampal CA1: transcription and neurotrophic factor down-regulation and up-regulation of apoptotic and pro-inflammatory signaling.

Authors:  Vittorio Colangelo; Jill Schurr; Melvyn J Ball; Ricardo Palacios Pelaez; Nicolas G Bazan; Walter J Lukiw
Journal:  J Neurosci Res       Date:  2002-11-01       Impact factor: 4.164

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  15 in total

Review 1.  Rodent models and contemporary molecular techniques: notable feats yet incomplete explanations of Parkinson's disease pathogenesis.

Authors:  Sharawan Yadav; Anubhuti Dixit; Sonal Agrawal; Ashish Singh; Garima Srivastava; Anand Kumar Singh; Pramod Kumar Srivastava; Om Prakash; Mahendra Pratap Singh
Journal:  Mol Neurobiol       Date:  2012-06-27       Impact factor: 5.590

Review 2.  Utility of correlation measures in analysis of gene expression.

Authors:  Anthony Almudevar; Lev B Klebanov; Xing Qiu; Peter Salzman; Andrei Y Yakovlev
Journal:  NeuroRx       Date:  2006-07

Review 3.  The microarray data analysis process: from raw data to biological significance.

Authors:  N Eric Olson
Journal:  NeuroRx       Date:  2006-07

Review 4.  Liquid chromatography with tandem mass spectrometry-based proteomic discovery in aging and Alzheimer's disease.

Authors:  Thomas J Montine; Randall L Woltjer; Catherine Pan; Kathleen S Montine; Jing Zhang
Journal:  NeuroRx       Date:  2006-07

Review 5.  Current status and future directions of gene expression profiling in Parkinson's disease.

Authors:  James G Greene
Journal:  Neurobiol Dis       Date:  2010-11-05       Impact factor: 5.996

6.  Microarray expression profiling in 6-hydroxydopamine-induced dopaminergic neuronal cell death.

Authors:  Bokyung Park; Chang-Ki Oh; Won-Seok Choi; In Kwon Chung; Moussa B H Youdim; Young J Oh
Journal:  J Neural Transm (Vienna)       Date:  2011-09-09       Impact factor: 3.575

Review 7.  Deep sequencing of coding and non-coding RNA in the CNS.

Authors:  Marcel van der Brug; Michael A Nalls; Mark R Cookson
Journal:  Brain Res       Date:  2010-03-20       Impact factor: 3.252

8.  Age-related changes of gene expression in the neocortex: preliminary data on RNA-Seq of the transcriptome in three functionally distinct cortical areas.

Authors:  Oksana Yu Naumova; Dean Palejev; Natalia V Vlasova; Maria Lee; Sergei Yu Rychkov; Olga N Babich; Flora M Vaccarino; Elena L Grigorenko
Journal:  Dev Psychopathol       Date:  2012-11

9.  Microarray analysis of oxidative stress regulated genes in mesencephalic dopaminergic neuronal cells: relevance to oxidative damage in Parkinson's disease.

Authors:  Vellareddy Anantharam; Elin Lehrmann; Arthi Kanthasamy; Yongjie Yang; Probal Banerjee; Kevin G Becker; William J Freed; Anumantha G Kanthasamy
Journal:  Neurochem Int       Date:  2007-02-23       Impact factor: 3.921

10.  Mitochondrial dysfunction, oxidative stress, and apoptosis revealed by proteomic and transcriptomic analyses of the striata in two mouse models of Parkinson's disease.

Authors:  Mark H Chin; Wei-Jun Qian; Haixing Wang; Vladislav A Petyuk; Joshua S Bloom; Daniel M Sforza; Goran Laćan; Dahai Liu; Arshad H Khan; Rita M Cantor; Diana J Bigelow; William P Melega; David G Camp; Richard D Smith; Desmond J Smith
Journal:  J Proteome Res       Date:  2008-02       Impact factor: 4.466

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