Literature DB >> 16814563

Transposon-mediated gene trapping in zebrafish.

Tomoya Kotani1, Saori Nagayoshi, Akihiro Urasaki, Koichi Kawakami.   

Abstract

The Tol2 transposon system can create chromosomal insertions in the zebrafish germ lineage very efficiently. We constructed a Tol2-based gene trap vector, T2KSAG, which contains a splice accepter, the GFP gene and the polyA signal. In the pilot screen for gene trapping using T2KSAG, we identified 38 fish lines expressing GFP in specific organs and tissues. In the SAGp53A line, GFP is expressed in the forebrain and midbrain, and the insertion of the gene trap construct captured a transcript of the kab gene encoding a zebrafish homolog of the human KARP (Ku86 autoantigen related protein)-binding protein (KAB). In the SAGm18B line, GFP is expressed in the central nervous system, and the insertion captured a transcript of a gene for succinyl CoA:3-oxoacid CoA-transferase (SCOT). Here, we describe how we performed the gene trap screen and characterized the gene trap insertions and will discuss the outcome of the pilot screen.

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Year:  2006        PMID: 16814563     DOI: 10.1016/j.ymeth.2005.12.006

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  36 in total

1.  Exploring strategies for protein trapping in Drosophila.

Authors:  Ana T Quiñones-Coello; Lisa N Petrella; Kathleen Ayers; Anthony Melillo; Stacy Mazzalupo; Andrew M Hudson; Shu Wang; Claudia Castiblanco; Michael Buszczak; Roger A Hoskins; Lynn Cooley
Journal:  Genetics       Date:  2006-12-18       Impact factor: 4.562

2.  Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition.

Authors:  Akihiro Urasaki; Ghislaine Morvan; Koichi Kawakami
Journal:  Genetics       Date:  2006-09-07       Impact factor: 4.562

Review 3.  Using retroviruses as a mutagenesis tool to explore the zebrafish genome.

Authors:  Li-En Jao; Lisette Maddison; Wenbiao Chen; Shawn M Burgess
Journal:  Brief Funct Genomic Proteomic       Date:  2008-10-31

4.  Regulatory divergence of the duplicated chromosomal loci sox11a/b by subpartitioning and sequence evolution of enhancers in zebrafish.

Authors:  Pavla Navratilova; David Fredman; Boris Lenhard; Thomas S Becker
Journal:  Mol Genet Genomics       Date:  2009-12-29       Impact factor: 3.291

5.  Generation of demyelination models by targeted ablation of oligodendrocytes in the zebrafish CNS.

Authors:  Ah-Young Chung; Pan-Soo Kim; Suhyun Kim; Eunmi Kim; Dohyun Kim; Inyoung Jeong; Hwan-Ki Kim; Jae-Ho Ryu; Cheol-Hee Kim; June Choi; Jin-Ho Seo; Hae-Chul Park
Journal:  Mol Cells       Date:  2013-06-25       Impact factor: 5.034

6.  Mys protein regulates protein kinase A activity by interacting with regulatory type Ialpha subunit during vertebrate development.

Authors:  Tomoya Kotani; Shun-ichiro Iemura; Tohru Natsume; Koichi Kawakami; Masakane Yamashita
Journal:  J Biol Chem       Date:  2009-12-14       Impact factor: 5.157

7.  The Tol2-mediated Gal4-UAS method for gene and enhancer trapping in zebrafish.

Authors:  Kazuhide Asakawa; Koichi Kawakami
Journal:  Methods       Date:  2009-02-03       Impact factor: 3.608

8.  Misty somites, a maternal effect gene identified by transposon-mediated insertional mutagenesis in zebrafish that is essential for the somite boundary maintenance.

Authors:  Tomoya Kotani; Koichi Kawakami
Journal:  Dev Biol       Date:  2008-02-13       Impact factor: 3.582

9.  DNA transposons: nature and applications in genomics.

Authors:  Martín Muñoz-López; José L García-Pérez
Journal:  Curr Genomics       Date:  2010-04       Impact factor: 2.236

10.  The cellular architecture of the larval zebrafish tectum, as revealed by gal4 enhancer trap lines.

Authors:  Ethan K Scott; Herwig Baier
Journal:  Front Neural Circuits       Date:  2009-10-09       Impact factor: 3.492

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